Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g5018 ATGAAGCAACAACCACGTTATACAAGAAGTCTTACAAATGTAGAAAGTGATTATGTATTGATTCTAAATGCTGTTGATCTAAATCGTGTTACTCTTCGTCACACTCTTGGTACAGATGAGCCAACAAGGTTCACTAGTCCTCTTTATGTTATTCTCCACCACCATAACCACATGAACGAGGTACGGACTAGTACAAGAAATATCGAAGAAACTATCCAAAGGCATTCTTATCGCAATCTCTCAAGAATTAGAGTTGAAGATGGAAAGGAGTCTGAAGCTATGACGTGTTCCATCTGTTTGGCGGAGCTTTTGGTTGGGTCGAAAGCAACTCAGTTGCCATGTTCGCATTTGTATCACGAAGGATGTATTACGAAATGGCTAGATAGATCAAATATGTACCCTTTGTGTCGTCAGATTGTTCCTAATATGTGA 432 0.3935 MKQQPRYTRSLTNVESDYVLILNAVDLNRVTLRHTLGTDEPTRFTSPLYVILHHHNHMNEVRTSTRNIEETIQRHSYRNLSRIRVEDGKESEAMTCSICLAELLVGSKATQLPCSHLYHEGCITKWLDRSNMYPLCRQIVPNM* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g5018 143 SMART ring_2 96 136 IPR001841 -
Mal2g5018 143 SUPERFAMILY RING/U-box 77 141 - -
Mal2g5018 143 ProSiteProfiles Zinc finger RING-type profile. 96 137 IPR001841 -
Mal2g5018 143 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 61 138 - -
Mal2g5018 143 Pfam Ring finger domain 95 137 IPR001841 -
Mal2g5018 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 142 IPR013083 -
Mal2g5018 143 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 61 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g5018 Mal-Chr2 116477269 116477700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g5018 38 141 C3H Transcription Factor Family AT1G14200 27.778 4.17e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g5018 - K22378 mtr:MTR_3g025550 100.523