Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4988 ATGTCAAAGAAGACTAGCTTAGGTAGACAAAAAATCCCTATTGAAAAAATACCTAAAAAAAGTCATTTACAAGTTACTTTCTCTAAGCGCCGTTCAGGACTATTCAAAAAAGCTAGTGAACTTTGCACTCTGTGTGGTGTTGAGATTGCAATTGTTGTTTTCTCTCCTGCTGATAAGGCATTCTCTTTTGGTCATCCAGAAGTTGAATCTATCGTTGATCGCTATTTGACTCGCAATCCTCCACAGGAATCTAGTACTAACCAACTTGTTGAGGCTCATAGAAATGCTAATGTTCGCGATCTCAACATCCAATTGACTCAACTTCTTAACCATTTGGAGATTGAAAAGAAACAAGGTGAAGAGATTGAATGCATGAGGAAAGCTAGGCAAAGGCAATTTTGGTGGGAGAGCCCTATTGATGAGCTTGGCTTAAATGAATTGGTTCAATTAAAGGGTTCTATCGAGGAGCTGAAGAAGAACATAGGAAATTTTGCTAGCAAATGCATGATGGAACAATCTAACGCCTATTCATCAAATATGGGAGCTAATGGATTTGTACGTTATGATTCCCTTGACAACAAATTTGGTGTTGGGATTAATATTGCTCCCCCACTTTCTAATGCCTATTATCTTGGATTCCGAAATGGGTATCTTTGA 657 0.382 MSKKTSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIVDRYLTRNPPQESSTNQLVEAHRNANVRDLNIQLTQLLNHLEIEKKQGEEIECMRKARQRQFWWESPIDELGLNELVQLKGSIEELKKNIGNFASKCMMEQSNAYSSNMGANGFVRYDSLDNKFGVGINIAPPLSNAYYLGFRNGYL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4988 218 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Mal2g4988 218 PANTHER MADS BOX PROTEIN 6 176 - -
Mal2g4988 218 Coils Coil 98 118 - -
Mal2g4988 218 Gene3D - 19 88 IPR036879 GO:0003677|GO:0046983
Mal2g4988 218 Gene3D - 89 181 - -
Mal2g4988 218 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Mal2g4988 218 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Mal2g4988 218 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Mal2g4988 218 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 6 176 - -
Mal2g4988 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Mal2g4988 218 SUPERFAMILY SRF-like 8 83 IPR036879 GO:0003677|GO:0046983
Mal2g4988 218 CDD MADS_MEF2_like 8 77 IPR033896 GO:0000977|GO:0045944
Mal2g4988 218 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4988 Mal-Chr2 115492691 115493347 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4988 4 206 Type I MADS-box Gene Family AT5G60440 48.558 3.06e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g4988 SRF-TF 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4988 - - gmx:100793705 327.791