Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4906 ATGCAACTCACTGAAGAACAACGCAAACAAATGGAATCGAATCGACTCGCTGCAATCGCAAAACGAAAAGCATTCTTAGAATCATCATCCAATTCTCAACAAAACCCTTGGCACCTTTTCAAATGCCAGAAAATTTCTCAACCTAAATCCCAACCCGATTTCAAATTCCTTGCGAGACTCGAAATTTGTTCTCATGATTCTTTCACAATCTCTCCTCTTCCGATCCCGTATTTTGCTTTTCCGACCTTCGATGTTTGTTTCGGCATTCTCAATAACATTCTCGCACAAATGAATGTGGATCCATCACATTTTACTCAAACAAGCGCGGGTGGGAAAGCATGTGTGTTCAAATTGGAAGACTACCGTAGCGTTTTGAAGCTGTTAAAGGCCGAGATTGAGGTGGAGGAGATTCCTTGGTGCACTTTCAATGTTGTTGAGAAGCTTTCGCATCTGGAAGGGAGGTGGACACCGGTGAGGCCGGAACATTTGAACGATGATGAGGTTGATGATTTGATTGGAAAGTTGCCTAAGAGTTTACTTGATGTATTGTTGCCGTTTCAAATGGATGGTTTAAGGTTTGCACTTAGAAGAGGTGGTCGATGTCTCATTGCTGATGAAATGGGACTTGGGAAGACACTTCAGGCTATTGCTATTGCGGGATGTTTCATGGATGAAGGATCTATACTTGTTGTTTGCCCTGCTGTTTTGCGGTATTCATGGGCTGAAGAAATTGAGCGGTGGCTTCCATCCTGCTTGCCTGCCGATATTCATCTCGTTTTTGGCCATCAAGACAATCCTGTAAATCTAACAAGATGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAGCGTAAATGGGCTCTTCTGATTGTTGATGAATCTCATCATGTACGCCCTACAAAGAAAACCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCTGAAATCAAGCGTATAATTCTGCTATCAGGGACACCTTCTTTGTCAAGACCGTTTGACATATTTCATCAGATAAATATGTTATGGCCAGGTTTGCTGGGGACAACAAAATATGAGTTTGCAAAAACTTATTGTGATCTCAAATATATCATGGGTGTCCAAGGAAAATATTTTGCGGATTATTCGAAGGGCATTCGCTTGGAGGAGTTGAATGTGTTACTAAAGCAAACTGTTATGATAAGGCGGCTCAAGGAACATGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTATAAGACTGTTGTTGAAGAGATCAGATATAGTTGCCGCAAAAACTGCAGTTGGGGTATTGAAGATTGATGCCTCTGAAAATGCTAGTAAAGATAGGCCTTTGGACAGTTTGGATGAACATGATGTTGGGATATTGAAGATTGATGCCTCTGGAAATGCTAGTGAAGATATGCCTTTGGACAGTTTGGATGAACATGATGTTGGGGTATGGAAGATTGATGCCTCTGAAAATGCTAGTGAAGATATGCCTTTCGACAGTTTGGATGAACATGATGGAAAGCTTACTTATCAAGAACTTGGAATTGCAAAGCTATCTGGGTTTCGTGAATGGCTTTCCTTCCATCCACTCATTGCAGGATCAGAGAATGCTTCAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTTTATATGTGAGAAAGGAGTAGGTTTTGTGCGAATAGATGGACATACACTACCCAGAGATAGACAATCCGCAGTAATCTCATTTCGATCATCTCCGGAGATTAAAATTGCGATAATAGGTGTTCTAGCAGCAGGTTTTGGACTTGATTTCTCGGCAGCACAAGATGTTGTGTTTTTGGAGCTACCTCAGAGCCCAACAGTGATGCTTCAGGCTGAGGACAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAACATATACATATTCTGTGCAAAGGATACTTGGGATGAATCACATTGGAAATATTTGAACAAAAGTTTGCATCGTGTTTCATCTACAACAGATGGCAAATATGATGCGGTGAAAGGGATAGAGGTTGAAGGTGTTTCTTATCTAGACCCATCCTTGAAAATTGACAGATCGGAAGAACAATCTGCATCCAAAGATGCATCAGTTGAAACACAATTGGAAAGGCAACCCTCTGCAGTGAAATTAAATGAAACAGAAGCAAATCAAGATGATCAATCTGGTCTTGTAAACAATAAAAACCAGGGTGCTAGTATTATGGTTGGCAGTGCTTCCTGCCTAGATCTAGGCCAGGCTTCAGTTTTGGATGGAAATGTTGATGATGTTTTTTATGCTCGGGATAGATGTTCTGAAGAGAGTTTAGAGGACAAAGATAAAGTAATACAGGATAAGAAATCAACTTCAACAACTGATGCAGATGACAACCAGCCCACTCATCCTGTTGAAGCTGAAGTAGACTGTTCTCATCAAGTTAATTCTCTGCGATTTGAGGTGAGCCCATACACCGGAAGGATCCACCTCTATACGTGTATTTTGGGTAAAGATACAAGACCACAGCCGCTTTATGAAAATTTCCGACCAGAGGACCTTGAGTTGCTGAGTCCTGCTGATGCTGATGAGAAACGGGGTATAGAGTTTGCATCTGTCAAGGATAACCCTGCTTATAGGATTGCTCTTCTGGATTTTGCAAATGAGTGGAAGAATTTAAGGTCAATTGAACGCAATAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTCGAATTGTGCTACTTAAGTGAAAGTAGTAACCACAACAACAAGGGACTAATAAATGGTGCAAGCAAACGGCGCATGACTCCTTTAGTGGACATCAGCTATCCCTTACCATCAGATGCTGTTTGGAAAAAGGTTTATCTTCGAAGTGGCCGTGGTAAGAAGGAAAAAGAATACACTCAAGGATGGAGCCCAGAAGATGAGCCTCTTTGTAAGCTTTGTCAAAAGCAATGCATGGGTAACAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGCCTGCCATCAAGAGTATCGCATGAGAACTAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAGCAAGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGTGAATGTAAGACCTTTGTCCCTTGAAAGACGGCGAGGGTACATCGAAAGAGTAGCACCAAATATTGCAAAGCGGAAGAAGATGTTTGAGAAGCTTATCAAAGATCCAATTGAAGGCAATGCATGGCATGCTGATCACATCGTTCCAGTATATAAAGGCGGAGGTGAATGCAAACTTGAGAATATGAGAACTCTTTGTGTGGCCTGCCATCATGATGTTACTGCTGTACAATGTGCTGAACGACGCATTATAAGAGCAAATGCCCGGAAACAACTAAAAGTATTGATGGATACCATGAAAAATAGTATGAAGGGTGCTGCTGGCAATAATAGTAATGAGGACCTAATGCTTCACGTGGAGCAAGAAAGTATGCATGAGGATGATATTTTAGTCCCGGTTCCTGGAAGTGCCTATTCGCTAGCTAATAGCCAAGAAAGTGGAGATGCAGCTTGTTAA 3615 0.4166 MQLTEEQRKQMESNRLAAIAKRKAFLESSSNSQQNPWHLFKCQKISQPKSQPDFKFLARLEICSHDSFTISPLPIPYFAFPTFDVCFGILNNILAQMNVDPSHFTQTSAGGKACVFKLEDYRSVLKLLKAEIEVEEIPWCTFNVVEKLSHLEGRWTPVRPEHLNDDEVDDLIGKLPKSLLDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRYSWAEEIERWLPSCLPADIHLVFGHQDNPVNLTRCPRVVVISYTMLHRLRKSMLERKWALLIVDESHHVRPTKKTSEPGEIKAVLDVASEIKRIILLSGTPSLSRPFDIFHQINMLWPGLLGTTKYEFAKTYCDLKYIMGVQGKYFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIRLLLKRSDIVAAKTAVGVLKIDASENASKDRPLDSLDEHDVGILKIDASGNASEDMPLDSLDEHDVGVWKIDASENASEDMPFDSLDEHDGKLTYQELGIAKLSGFREWLSFHPLIAGSENASKMIIFAHHHKVLDGVQEFICEKGVGFVRIDGHTLPRDRQSAVISFRSSPEIKIAIIGVLAAGFGLDFSAAQDVVFLELPQSPTVMLQAEDRAHRRGQTNAVNIYIFCAKDTWDESHWKYLNKSLHRVSSTTDGKYDAVKGIEVEGVSYLDPSLKIDRSEEQSASKDASVETQLERQPSAVKLNETEANQDDQSGLVNNKNQGASIMVGSASCLDLGQASVLDGNVDDVFYARDRCSEESLEDKDKVIQDKKSTSTTDADDNQPTHPVEAEVDCSHQVNSLRFEVSPYTGRIHLYTCILGKDTRPQPLYENFRPEDLELLSPADADEKRGIEFASVKDNPAYRIALLDFANEWKNLRSIERNKLLGKPLQLPLAVELCYLSESSNHNNKGLINGASKRRMTPLVDISYPLPSDAVWKKVYLRSGRGKKEKEYTQGWSPEDEPLCKLCQKQCMGNNAKTPEYFEDLFCNLACHQEYRMRTSNRFLRQELFQIEQGVCTNCQLDCHKLVVNVRPLSLERRRGYIERVAPNIAKRKKMFEKLIKDPIEGNAWHADHIVPVYKGGGECKLENMRTLCVACHHDVTAVQCAERRIIRANARKQLKVLMDTMKNSMKGAAGNNSNEDLMLHVEQESMHEDDILVPVPGSAYSLANSQESGDAAC* 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4906 1204 Pfam HNH endonuclease 1089 1125 IPR002711 GO:0003676|GO:0004519
Mal2g4906 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 407 IPR027417 -
Mal2g4906 1204 CDD SF2_C_SNF 525 654 - -
Mal2g4906 1204 Gene3D - 161 397 IPR038718 -
Mal2g4906 1204 Gene3D - 1014 1151 - -
Mal2g4906 1204 MobiDBLite consensus disorder prediction 787 803 - -
Mal2g4906 1204 MobiDBLite consensus disorder prediction 787 813 - -
Mal2g4906 1204 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 689 IPR001650 -
Mal2g4906 1204 SMART helicmild6 560 643 IPR001650 -
Mal2g4906 1204 Pfam SNF2-related domain 201 438 IPR000330 GO:0005524|GO:0140658
Mal2g4906 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 693 IPR027417 -
Mal2g4906 1204 SMART ultradead3 179 375 IPR014001 -
Mal2g4906 1204 MobiDBLite consensus disorder prediction 704 724 - -
Mal2g4906 1204 Pfam Helicase conserved C-terminal domain 542 643 IPR001650 -
Mal2g4906 1204 CDD HNHc 1087 1127 IPR003615 -
Mal2g4906 1204 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1149 - -
Mal2g4906 1204 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1149 - -
Mal2g4906 1204 CDD DEXHc_HARP_SMARCAL1 183 407 - -
Mal2g4906 1204 Gene3D - 481 740 IPR027417 -
Mal2g4906 1204 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 356 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4906 Mal-Chr2 113261091 113280603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4906 548 661 RAD5 or RAD16-like Gene Family AT1G11100 36.842 1.51e-14 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal2g4906 SNF2_N 7e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4906 K25861 - gmx:100788690 1716.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g4906 2 113261091 113280603 Mal2g4906 2 113261091 113280603 ECH