Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4866 ATGTCTAGCAGGAGGTCACGGTCAAGGCAAACAAGTAGCTCAAGAAACATCACCGACGATCAGATCCATGATCTTGTCTCCAAGTTGCAGCAACTTCTTCCTGAGATTCGCAATAGGAACTCTGACAAGGTTTCAGCTTCGAGGGTGTTGCAGGAGACTTGCAACTATATTAGAAACTTGAACAGGGAAGTTGACGACCTAAGTGAGCGTTTGTCTGAGCTATTGGCTACAACAGATACAGCACAAGCAGCAATAATTAGAAATTTACTTATGCCATAG 279 0.4373 MSSRRSRSRQTSSSRNITDDQIHDLVSKLQQLLPEIRNRNSDKVSASRVLQETCNYIRNLNREVDDLSERLSELLATTDTAQAAIIRNLLMP* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4866 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Mal2g4866 92 MobiDBLite consensus disorder prediction 1 20 - -
Mal2g4866 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Mal2g4866 92 Coils Coil 50 77 - -
Mal2g4866 92 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Mal2g4866 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Mal2g4866 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Mal2g4866 92 CDD bHLH_AtPRE_like 17 77 - -
Mal2g4866 92 Gene3D - 18 88 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4866 Mal-Chr2 110108572 110110040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4866 1 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 72.826 2.43e-39 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal2g4866 HLH 0.00011 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4866 - - aprc:113851739 150.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g0159 3 5831458 5834225 Mal2g4866 2 110108572 110110040 ECH
Mal6g3775 6 110134934 110137289 Mal2g4866 2 110108572 110110040 ECH
Mal6g1937 6 41835096 41836050 Mal2g4866 2 110108572 110110040 ECH
Mal5g2530 5 72365390 72366736 Mal2g4866 2 110108572 110110040 ECH
Mal2g4866 2 110108572 110110040 Mal2g4866 2 110108572 110110040 ECH