Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4843 ATGGCTTCTCTACTCTCACAAACCAATTTCCTTTCTCTAAGTAACAACACTTACACAAACTTTAACTTGAAACCCAAAACGACAACACCTTCTTCCCTTGTCGTTGGAACACCAACGACACGTCGTTTTAGAAAACATTTTGTGGTTTCTTCTGAACAAGTCACGGTGGATTCTCCTGCGGTTAGAAAGCTTTACGTTGGTAACATTCCTCGTAATGTTACTAATGATGAACTTGCCAAGATTGTTCAAGAACATGGTGCTGTTGAAAAAGCTGAGGTTATGTATGATAAAAACTCTAAAAGGAGCCGTCGCTTTGCATTTGTTACAATGAAAACCGTTGAGGATGCAAATGCAGCAGCTGAGAAACTCAATGGCACTCAAATTGGAGGGCGTGAGATTAAAGTGAATATAACCGAAAAACCTTTAACAACGGGAGGTTTGCCACTGCAGGCTGAGGAATCGGAATTTGTTGTAAGTCCCTACAAGGTATATGTGGGAAATTTGGCTAAGAATGTAACATCTGATAGCCTTAAAAATTTCTTCTCGGAAAAAGCTAAAGTTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACCTCAAAATCCAGTGGTTTCGGTTTTGTAACTTTTTCATCAGATGAGGATGTAGAAGCTGCTATCTCATCTTTCAACAATGCTTTGTTGGAAGGGCAGAAAATCCGTGTGAATAAGGCGTAG 714 0.4048 MASLLSQTNFLSLSNNTYTNFNLKPKTTTPSSLVVGTPTTRRFRKHFVVSSEQVTVDSPAVRKLYVGNIPRNVTNDELAKIVQEHGAVEKAEVMYDKNSKRSRRFAFVTMKTVEDANAAAEKLNGTQIGGREIKVNITEKPLTTGGLPLQAEESEFVVSPYKVYVGNLAKNVTSDSLKNFFSEKAKVLSAKVSRVPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4843 237 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 237 IPR000504 GO:0003723
Mal2g4843 237 SMART rrm2_1 63 136 IPR003954 GO:0003676
Mal2g4843 237 SMART rrm2_1 162 235 IPR003954 GO:0003676
Mal2g4843 237 SMART rrm1_1 162 235 IPR000504 GO:0003723
Mal2g4843 237 SMART rrm1_1 63 136 IPR000504 GO:0003723
Mal2g4843 237 SUPERFAMILY RNA-binding domain, RBD 157 237 IPR035979 GO:0003676
Mal2g4843 237 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Mal2g4843 237 PANTHER OS02G0815200 PROTEIN 13 237 - -
Mal2g4843 237 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 233 IPR000504 GO:0003723
Mal2g4843 237 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 134 IPR000504 GO:0003723
Mal2g4843 237 Gene3D - 37 143 IPR012677 -
Mal2g4843 237 SUPERFAMILY RNA-binding domain, RBD 47 140 IPR035979 GO:0003676
Mal2g4843 237 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 13 237 - -
Mal2g4843 237 Gene3D - 148 237 IPR012677 -
Mal2g4843 237 CDD RRM_HP0827_like 63 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4843 Mal-Chr2 108297805 108301782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4843 64 234 Eukaryotic Initiation Factors Gene Family AT1G22760 26.901 1.90e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4843 K13126 - gmx:100783567 305.834