Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4812 ATGGAGTGTGGAAACGTGTCATTGAAAAGCATAGTCTGCAAACTCAAGCATTGGCTCTATCGGTCAAATTCCCATGTTGCTTTGGATGATGCAACTCCAATTGAACCTATTCAACAGGGACAATGGGCAAGTCTACCACCTGAATTGATTTTGGACATAATTCGTAGGGTTAACGAGAGTGAGACATCTTGGCCTGCGCGTGTTGTTGTTGTCTTTTGTGCTTCGGTATGTAAATCATGGAGGTCTGCCACTTCAGAGCTGAAATGTGGAAGGATTACATTTCCTATTTCATTGAAGCAACCCGGTCCCCGTGATCATCCGATACAGTGCTTTATTAGGAGGAACAAAAGAACTTTTACATTCCTGTTGTACTTAGGTCTGGCGCCATGTAAGATAAGATGGTCCAACTTTGTCATATCCTTGGCAGCAGATGATTTTTCTCAAGCCAGCAACAAATATGTTGGTAAAGTGAGGACTAATTTTCGGGGTACCAATTTCAGTATATACGACAGTCAACCTCCACATGATGCTGCAGTTCGATCAAATTGTCGATCAAGTGGGATATTTAATTCTGAGCTTGTGTCACCAAGAAGAGTTCCATCTTGTAGCCATCTTGTTAGCACCATTTGTTATGAGTTTCTCACTAGAAAGCCAAGAAGAATGCCTTGCATCATGAACTCTAACATCGTTACCACTCTTCAAGAAGGGGCCCCGTCTCGAATATTGTTACCTCAAATATTTGATGAACCTTTTTCTCCTTCACCAACACCAAAGGGAAAAAGTTCAACGACAATTTCATACTCTGCAAGCCAATCAAAGCTACCAGGACTGAGCCAAGGTTTGTACCACGAGACTTGGTGCTTAGACTATATGGACTGCGCTCCAATATTGCGCTCTATAAAGAACTTTCAACTAATAGAATATGTTGATCCATCACATAATGTTTCTCCTGTAGAGCCAGAGAAGGTAATCTTGCAGTTTGGAAAGATTGGAAAAAATATATTTACCATGAACTACTCTTATCCACTCTCGGCCTTCCAAGCCTTTGCCATCTGCTTGACATCAATGAGAGCCCGCAAACTACATATGTAA 1092 0.4158 MECGNVSLKSIVCKLKHWLYRSNSHVALDDATPIEPIQQGQWASLPPELILDIIRRVNESETSWPARVVVVFCASVCKSWRSATSELKCGRITFPISLKQPGPRDHPIQCFIRRNKRTFTFLLYLGLAPCKIRWSNFVISLAADDFSQASNKYVGKVRTNFRGTNFSIYDSQPPHDAAVRSNCRSSGIFNSELVSPRRVPSCSHLVSTICYEFLTRKPRRMPCIMNSNIVTTLQEGAPSRILLPQIFDEPFSPSPTPKGKSSTTISYSASQSKLPGLSQGLYHETWCLDYMDCAPILRSIKNFQLIEYVDPSHNVSPVEPEKVILQFGKIGKNIFTMNYSYPLSAFQAFAICLTSMRARKLHM* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4812 363 Pfam F-box domain 42 88 IPR001810 GO:0005515
Mal2g4812 363 PANTHER TUBBY-RELATED 30 359 - -
Mal2g4812 363 Gene3D - 35 91 - -
Mal2g4812 363 PRINTS Tubby superfamily signature 137 153 IPR000007 -
Mal2g4812 363 PRINTS Tubby superfamily signature 320 339 IPR000007 -
Mal2g4812 363 PRINTS Tubby superfamily signature 291 307 IPR000007 -
Mal2g4812 363 PRINTS Tubby superfamily signature 153 177 IPR000007 -
Mal2g4812 363 PRINTS Tubby superfamily signature 341 363 IPR000007 -
Mal2g4812 363 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 30 359 - -
Mal2g4812 363 SUPERFAMILY Tubby C-terminal domain-like 89 359 IPR025659 -
Mal2g4812 363 Pfam Tub family 98 356 IPR000007 -
Mal2g4812 363 Gene3D Tubby Protein; Chain A 95 362 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4812 Mal-Chr2 106907459 106908933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4812 6 359 TUB Transcription Factor Family AT2G18280 44.059 1.41e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mal2g4812 Tub 2.3e-56 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4812 K19600 - gmx:100805380 407.527