Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4726 ATGTCCAATAGGGTTTGCAAGTTCTATGCCCGAGGCGTGTGTTTGAAAGGCGAGCAATGTGATTTTACACATCAGAGAAAGGATAATACTCCAGCTGATATTTGCTCTTATTATCAGAAAGGGTCGTGTGCTTATGGTAGTCGATGCAGATATAAGCATGTCAGAGCTTCTCAAGCATCATCTTCGGCATCTATGGTGTCAGATTCTGCTGTGCCTGTGGCTCGTAGTGCTAAAGTAGTATCAAATTGGGTTCCGAAGGTTACAAAGGTTCCTTCACCTGACAAGCGTGGCGTTAAGGGTTTACAACGCAAGCATCAGGACTCTACAGATGTTGGTGAGTCCAGTAATGGTAGTGCTAGACCACATGAAAATTTGTTTTGTAAATTTGCTGCCGCCAACTGCCCCGGTCGATGTTCTCGTGTTCACGGAAATCAATGCTTGTATTGTAGAAAATATTGCCTGCATCCTACAGATAAAAAGGAAAAAGAAAATCATTTGAGGACTTGTGACAAAAAGGAAAAGTACCTTCTGGCTTTGAAAAATAGTGAAGAGATAGAATGCAATGTTTGTCTTGAGCGTGTCCTTTCCAAACCCAAGCCATCAGAATGTAAGTTTGGGTTGCTTCCAGAATGCGATCACGCTTTCTGTTTGTCATGTATCCGCAACTGGCGTAATAGTGCTCCAACCTCTGCAATGGAAATCGGTAGTAACACCAATACAGTGAGAACCTGCCCTGTTTGCCGCAAACTATCGTATTTTGTCATTCCAAGTGGTATTTGGTATACTACAAAGGAAGAAAAACAGGAAATTATTGATAACTACAAGGCAAACTGCAGATTGATTGATTGCAAACATTTTGACTCTGGAAATGGAAATTGTCCATTTGGGGCTAGCTGTTTCTACAAGCATACAGTGAAGCCTGGCTCATACACATGGAGACACCGCAGACCACCGCCTCAACGCAGACAAAACCATTACGATATGCATGATGTGTTAGATATGCTCAGTGAGGTTGATCTATCAAGTGGAGAATTTTATTCCATCATGAGGGACTCAGAGTTTTTTGAGGGAATGGATCCATTCGAGATGATGGCATTATCAGATTCGCTGGCTGGTGGTTCAGGTCCTTGTTTGAATCCTTTTGATTCCGACGATGAGGACAATGGGTATGATGTTTTTCGAATGGCTGCTGGGATGGATGGTTTTGGTCATGATGACAATGAGGAGGATGAGTTTGATATTTTTCGAATGGCTGCTATGTCACAGGCCATTGCTTCTGGGATTGATGATTTTGGCCCTGATGATTTTGATGGAATTGATCCTATGGATGCAGCCTTGTTATCAATGATGATGCATTCTCATATGGACGACGACGAAGATGATGAGGATGAGGATGAAGAAGAATTCACTGATGATGAATATTAG 1425 0.4232 MSNRVCKFYARGVCLKGEQCDFTHQRKDNTPADICSYYQKGSCAYGSRCRYKHVRASQASSSASMVSDSAVPVARSAKVVSNWVPKVTKVPSPDKRGVKGLQRKHQDSTDVGESSNGSARPHENLFCKFAAANCPGRCSRVHGNQCLYCRKYCLHPTDKKEKENHLRTCDKKEKYLLALKNSEEIECNVCLERVLSKPKPSECKFGLLPECDHAFCLSCIRNWRNSAPTSAMEIGSNTNTVRTCPVCRKLSYFVIPSGIWYTTKEEKQEIIDNYKANCRLIDCKHFDSGNGNCPFGASCFYKHTVKPGSYTWRHRRPPPQRRQNHYDMHDVLDMLSEVDLSSGEFYSIMRDSEFFEGMDPFEMMALSDSLAGGSGPCLNPFDSDDEDNGYDVFRMAAGMDGFGHDDNEEDEFDIFRMAAMSQAIASGIDDFGPDDFDGIDPMDAALLSMMMHSHMDDDEDDEDEDEEEFTDDEY* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4726 474 SUPERFAMILY RING/U-box 177 254 - -
Mal2g4726 474 MobiDBLite consensus disorder prediction 452 474 - -
Mal2g4726 474 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Mal2g4726 474 CDD RING-HC_MKRN 187 248 - -
Mal2g4726 474 Pfam Zinc finger, C3HC4 type (RING finger) 187 247 IPR018957 GO:0046872
Mal2g4726 474 MobiDBLite consensus disorder prediction 456 474 - -
Mal2g4726 474 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Mal2g4726 474 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 474 - -
Mal2g4726 474 SMART c3hfinal6 277 305 IPR000571 GO:0046872
Mal2g4726 474 SMART c3hfinal6 2 26 IPR000571 GO:0046872
Mal2g4726 474 SMART c3hfinal6 29 55 IPR000571 GO:0046872
Mal2g4726 474 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Mal2g4726 474 Gene3D - 1 71 - -
Mal2g4726 474 ProSiteProfiles Zinc finger RING-type profile. 187 248 IPR001841 -
Mal2g4726 474 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Mal2g4726 474 Pfam RNA-binding, Nab2-type zinc finger 282 303 - -
Mal2g4726 474 Pfam RNA-binding, Nab2-type zinc finger 6 24 - -
Mal2g4726 474 SMART ring_2 187 247 IPR001841 -
Mal2g4726 474 SUPERFAMILY CCCH zinc finger 30 53 IPR036855 GO:0046872
Mal2g4726 474 ProSiteProfiles Zinc finger C3H1-type profile. 277 306 IPR000571 GO:0046872
Mal2g4726 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 260 IPR013083 -
Mal2g4726 474 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Mal2g4726 474 MobiDBLite consensus disorder prediction 92 110 - -
Mal2g4726 474 MobiDBLite consensus disorder prediction 88 118 - -
Mal2g4726 474 PANTHER MAKORIN-RELATED 1 474 IPR045072 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4726 Mal-Chr2 102927652 102933318 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal2g4726 zf-C3HC4 6.5e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4726 K15687 - gmx:100788886 635.565