Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4681 ATGAAAAAAAAAAATACTTGGAATATACTTATTGCAGAATTAGAACCAAAGATCTATGCCAATCACAAGTTTGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGACGTACCCTTGTTGATTACAATATTCAGAAGGACTGCCTCCACCCTACATTTGGAATAACCATCACCCTTGAGGTGGAGAGCTCTGATACCACTGGCAATGTTAAGGCCAAGAAACAAGACAAAGAGGGTATCCCACCAGATCAGCAGAGGCTCATTTTTGCTGCAAAACGACTTGAAGATGGTCAAGCTTTAGCTAATTACAACATCCAGAAAGAGTCGACTTCGTGGAAGGGATCCCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCAAACTCTAGCTGATTACAATATCCAGAAAGAATCCACCTGTCCTTCGTTTGAGGGGAGGCATGCAGGTCTTTGTGAAGACTTTGAGGAAAGACCATTAGATTGGGAGGTAGAAAGTTCATACACAATCAATAATGTGAAGGCAAAAATTCAGGGCAAAAATAGGAGCGGTTTAACTTAA 576 0.4201 MKKKNTWNILIAELEPKIYANHKFDQQRLIFAGKQLEDGRTLVDYNIQKDCLHPTFGITITLEVESSDTTGNVKAKKQDKEGIPPDQQRLIFAAKRLEDGQALANYNIQKESTSWKGSQQRLIFAGKQLEDGQTLADYNIQKESTCPSFEGRHAGLCEDFEERPLDWEVESSYTINNVKAKIQGKNRSGLT* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4681 191 PANTHER UBIQUITIN 25 50 - -
Mal2g4681 191 PANTHER UBIQUITIN 119 185 - -
Mal2g4681 191 PANTHER UBIQUITIN 57 113 - -
Mal2g4681 191 PANTHER - 25 50 - -
Mal2g4681 191 PANTHER - 119 185 - -
Mal2g4681 191 PANTHER - 57 113 - -
Mal2g4681 191 ProSiteProfiles Ubiquitin domain profile. 25 49 IPR000626 GO:0005515
Mal2g4681 191 SUPERFAMILY Ubiquitin-like 57 113 IPR029071 -
Mal2g4681 191 SMART ubq_7 47 127 IPR000626 GO:0005515
Mal2g4681 191 SUPERFAMILY Ubiquitin-like 114 145 IPR029071 -
Mal2g4681 191 Gene3D - 116 146 - -
Mal2g4681 191 Gene3D - 2 54 - -
Mal2g4681 191 ProSiteProfiles Ubiquitin domain profile. 59 113 IPR000626 GO:0005515
Mal2g4681 191 SUPERFAMILY Ubiquitin-like 10 51 IPR029071 -
Mal2g4681 191 ProSiteProfiles Ubiquitin domain profile. 118 145 IPR000626 GO:0005515
Mal2g4681 191 Gene3D - 55 115 - -
Mal2g4681 191 Pfam Ubiquitin family 25 50 IPR000626 GO:0005515
Mal2g4681 191 Pfam Ubiquitin family 59 113 IPR000626 GO:0005515
Mal2g4681 191 Pfam Ubiquitin family 118 145 IPR000626 GO:0005515
Mal2g4681 191 PRINTS Ubiquitin signature 100 121 IPR019956 -
Mal2g4681 191 PRINTS Ubiquitin signature 79 99 IPR019956 -
Mal2g4681 191 PRINTS Ubiquitin signature 58 78 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4681 Mal-Chr2 101029334 101029989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4681 25 50 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 92.308 3.98e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4681 - K08770 wse:WALSEDRAFT_52959 182.956