Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4653 ATGTATCCACAAAGTTTACTTCTTTCACTTTTCACCATTTTAGCCTCATTTGGTTTGTGTTTTGGCTCTTACTTAGAAGAAATGCATTATTTAACAAATCATCAACCTTACAATGAGAGATTGATGAAGCAAAAACATGAACAATTTGGTGTCATGAGAAAGGCTCATCATCGATCTATCGCACCTTCGCCATCTCAAAATACGGTTAATGTTGATGACTATGGAGCCAGATCGAACGACGGACAAGTCGATAATGAGGCATTTGAAATGGCATGGAATGAGGCATGTTCTAATGGGAATGTTCTTGTGGTACCTGAACAAAGTGTCTATCATCTAAAGCCTATAACATTTTCAGGGCCATGCCAACCCAATACTGCATTTAAGATCTATGGAACAATCAAAGCATGGCCTAAAATGTCAGCATATGGAAAAGATAGAAGGCTTTGGATCAAGTTTGATAATGTCACAAATCTCATAGTTGATGGTGGTGGTACCATTAATGGAAATGGAAGAAAATGGTGGCAGAATTCTTGCAAAGTCAATGAAAGCCTTCCATGCCAAGGGGCACCAACTGCTGTGACTTTCAATGAATGCAACAATTTGAAGGTGGTTAACCTAAGGTTCAAAAATGCACAACAAATGCATATAAGGATTCAAGGATGCTACAATGTTTGGGCTTCAAATTTAATTGTCACAGCACCAGGGCACAGCCCCAACACTGATGGAATTCATGTTACCCATTCACAAAATGTTTTCATTAGCAACAGCACCATTGGAACTGGTGATGATTGCATTTCAATTGTGAGTGGGTCCAAAAATGTACGAGCCACAGATATCACTTGTGGACCGGGACATGGAATAAGCATTGGAAGCTTAGGAGGAGGTAACACAGAAGCTGAAGTGTCCAATGTGGAAGTGAATAGAGCCACACTAATAGGAACCACTAATGGAGTCAGAATAAAGACTTGGCAGGGAGGTTCGGGCTATGCAAGAAACATCAAATTTATCAACATAGTTATGCGAAATGTGACTAATCCCATAGTCATAAATCAAAAATATTGTGACCAAAAAAAGGAATGTGAAGAGCAGGACTCAGCTGTGCAATTGAGCAACGTGGTGTACAAAAACATAAAAGGAACAAGTGCTTCAGAAGTGGCAATAAAACTTGAATGCAGCAAAGCTTCCCCATGCAAAGGAATTCACTTGCAAGATGTGAAATTAACAGCAGAAGGCAATGACACCATTGCAAAATGTGACAATGTTAGATATTCAGACAGTGGAATGTTTTATCCTAAATGTCACCCTTGA 1308 0.3937 MYPQSLLLSLFTILASFGLCFGSYLEEMHYLTNHQPYNERLMKQKHEQFGVMRKAHHRSIAPSPSQNTVNVDDYGARSNDGQVDNEAFEMAWNEACSNGNVLVVPEQSVYHLKPITFSGPCQPNTAFKIYGTIKAWPKMSAYGKDRRLWIKFDNVTNLIVDGGGTINGNGRKWWQNSCKVNESLPCQGAPTAVTFNECNNLKVVNLRFKNAQQMHIRIQGCYNVWASNLIVTAPGHSPNTDGIHVTHSQNVFISNSTIGTGDDCISIVSGSKNVRATDITCGPGHGISIGSLGGGNTEAEVSNVEVNRATLIGTTNGVRIKTWQGGSGYARNIKFINIVMRNVTNPIVINQKYCDQKKECEEQDSAVQLSNVVYKNIKGTSASEVAIKLECSKASPCKGIHLQDVKLTAEGNDTIAKCDNVRYSDSGMFYPKCHP* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4653 435 SMART pbh1 330 351 IPR006626 -
Mal2g4653 435 SMART pbh1 301 322 IPR006626 -
Mal2g4653 435 SMART pbh1 248 269 IPR006626 -
Mal2g4653 435 SMART pbh1 221 247 IPR006626 -
Mal2g4653 435 PANTHER POLYGALACTURONASE 7 434 - -
Mal2g4653 435 SUPERFAMILY Pectin lyase-like 58 434 IPR011050 -
Mal2g4653 435 Gene3D - 53 432 IPR012334 -
Mal2g4653 435 ProSitePatterns Polygalacturonase active site. 278 291 IPR000743 GO:0004650|GO:0005975
Mal2g4653 435 PANTHER - 7 434 - -
Mal2g4653 435 Pfam Glycosyl hydrolases family 28 101 422 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4653 Mal-Chr2 99810644 99815451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4653 1 433 Glycoside Hydrolase AT3G07970 54.299 9.12e-160 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4653 K01184 - gmx:100796446 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g4653 2 99810644 99815451 Mal2g4653 2 99810644 99815451 ECH
Mal5g1751 5 34912111 34913880 Mal2g4653 2 99810644 99815451 PCT