Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4501 ATGGAGCAACAACCACGTTACATAAGAAGTCTTATAAATGCAGAAAGTGATTATGTAAGGATTCTGAACGCTATTGATCTACGTCGCTCTACTCTTTATCACAATCTTGGTATAGATCAGTCAACATGGTTCACTCTCTTGCCTACTAACCACATCAACGAGGTACGGACTAGTACAAGAAATATTGAAGAAACTATCCAAAGGCGGCATTCTTATCGCAATCTTTCAAGAATTAGAGTTGAAGAAGTAAAGGAGTCTGAAGCTATGATGTGTTCCATCTGTTTGACGGAGCTTTTGGTTGGGTCGAAAGCAACCCAATTGTCGTGTTCACATGTGTATCACGAAGCATGTATTATGAAATGGCTAGATAGATCAAACACATGCCCTTTGTGTCGCCAGATTGTTCCTAACATGTGA 417 0.3981 MEQQPRYIRSLINAESDYVRILNAIDLRRSTLYHNLGIDQSTWFTLLPTNHINEVRTSTRNIEETIQRRHSYRNLSRIRVEEVKESEAMMCSICLTELLVGSKATQLSCSHVYHEACIMKWLDRSNTCPLCRQIVPNM* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4501 138 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 62 133 - -
Mal2g4501 138 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 62 133 - -
Mal2g4501 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 137 IPR013083 -
Mal2g4501 138 ProSiteProfiles Zinc finger RING-type profile. 91 132 IPR001841 -
Mal2g4501 138 Pfam Ring finger domain 90 132 IPR001841 -
Mal2g4501 138 SMART ring_2 91 131 IPR001841 -
Mal2g4501 138 SUPERFAMILY RING/U-box 72 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4501 Mal-Chr2 91663288 91663704 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4501 75 132 C3H Transcription Factor Family AT4G12190 50.794 3.53e-16 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4501 - K22378 mtr:MTR_3g025550 101.293