Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4486 ATGGTCCATCAACATCGTTTGGTAAATTGGTTGACTGAAGACAATAGTCCAGTCCGTGATGCTAGATCTCAGAGATATATGTTGGGTCTTAACTCTGCGGATAATTCTTCTGTTGGTTTCAGTAATCTCATTACAAGAGAATCAAGAACTACAAGCACCATTACCAGTCATAATGATAATCGTTTTTCTTCTTTTTCCTCTTCTCCACCAAGAGTTGTTGGATTAACTCTAAACATGATTCCTACTTTGGACAATAACAACACCGCTCAAGTCATCAATGGAAGATCAACAAATGTGCCATCCATCCCACCTATTGAAGGACAAACTGGAGTTGGATCCGCTACAGGAAACAGTTGTAATGCTAGTTCCATTTTCTCTTTCGATGGTGGAATTAACACCACCACCACCACTACTACAACTACACACATGATGAATGAAGTTGTTGTTGCAGATGAAGAACCAAGAAGTACTACTATTCAATCTCAAATAAATAGTCATACTCATGGTCCAGCTAATATTTTAGAAGATGATGATCCAACATCATATCATAATTCAACTCATCAGAATTTTCCCACTAGGCCGCTCGATATTCTTAGTTTATTAAGTCATGAAGAGCATCCTTGGATGAACTTCATCAGAAGAAGAAATGACATTTCACCTCCCTCTGCATCAAGAGCAACAGGAGAAGCAACAGGTTCTTCTTCTCAAAGCATAAGCTCAAGACAAAATGATAATAATAACAACTACTTCAACTTCTGTGATACTTTTCTTGCTCCGAATATTGTTCCTGGGAGGCCTACTAGTTCTGTACCACCACCACTGCCACCTTCAAATCCATCACCAAGTGATTACCGGATAAACTCTTCTCCACCTCCTCCCACACATAGGTTTAGTATTGTTGTACAAAGTGAGCAGTACAGGGAGATTGACTCAACATTTCCAAGTTCAGAGAGTCCAACTCGTCCCGGTAATAACAACATTTCTATTTCAACTTCTGAAATTATGGCAGAGACGAACAGACTCATGGATGAGATTCAAAGCTCCCTACAATATCTTCGCAATGGTGGCTCTGTCCGGAGAGAGGACGTGACGATACTTGATTTCCTGGTCGTGCTAAATCCGCTAATTGATTCAGAGGATTGGCCGAACGAGCTAATGGCTGACCTTGAGAGTCAAATGGCCAGTGTTGAGACGGGGTTGAATGAGCAGGAAATCCTCATATGCATCAATGAAGAGACTTACCAGTTCAACACTGATGAAACCAGCACACAAAACCAAACCTGCACCATATGCCAGGAAGATTTTGTGGACGGGGAGAGAATTGGTAGACTTGATTGTATGCATATATATCATTTTGACTGCATCAAACCATGGTTGGAGTTGAGGAATGCTTGTCCAATCTGTAAGCAGACAGCTCTGGAAAATGATGAAGATGAGAATGAAAGTGAAGATGGGAATTGA 1461 0.4079 MVHQHRLVNWLTEDNSPVRDARSQRYMLGLNSADNSSVGFSNLITRESRTTSTITSHNDNRFSSFSSSPPRVVGLTLNMIPTLDNNNTAQVINGRSTNVPSIPPIEGQTGVGSATGNSCNASSIFSFDGGINTTTTTTTTTHMMNEVVVADEEPRSTTIQSQINSHTHGPANILEDDDPTSYHNSTHQNFPTRPLDILSLLSHEEHPWMNFIRRRNDISPPSASRATGEATGSSSQSISSRQNDNNNNYFNFCDTFLAPNIVPGRPTSSVPPPLPPSNPSPSDYRINSSPPPPTHRFSIVVQSEQYREIDSTFPSSESPTRPGNNNISISTSEIMAETNRLMDEIQSSLQYLRNGGSVRREDVTILDFLVVLNPLIDSEDWPNELMADLESQMASVETGLNEQEILICINEETYQFNTDETSTQNQTCTICQEDFVDGERIGRLDCMHIYHFDCIKPWLELRNACPICKQTALENDEDENESEDGN* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4486 486 MobiDBLite consensus disorder prediction 263 295 - -
Mal2g4486 486 ProSiteProfiles Zinc finger RING-type profile. 428 469 IPR001841 -
Mal2g4486 486 SUPERFAMILY RING/U-box 410 474 - -
Mal2g4486 486 SMART ring_2 428 468 IPR001841 -
Mal2g4486 486 MobiDBLite consensus disorder prediction 162 189 - -
Mal2g4486 486 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 474 IPR045191 GO:0061630
Mal2g4486 486 MobiDBLite consensus disorder prediction 220 245 - -
Mal2g4486 486 MobiDBLite consensus disorder prediction 265 288 - -
Mal2g4486 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 485 IPR013083 -
Mal2g4486 486 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 4 474 - -
Mal2g4486 486 MobiDBLite consensus disorder prediction 215 245 - -
Mal2g4486 486 Pfam Ring finger domain 427 469 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4486 Mal-Chr2 91211916 91215218 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4486 339 474 C3H Transcription Factor Family AT2G15530 32.667 2.78e-22 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4486 - - mtr:MTR_5g016960 309.301