Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4454 ATGTGGATTGTTCCAGATGGCACGAGTCCTTCTGAGATTGGAAGTATTAATATGATATTGCTTGATGAAAAGTGTGGTAAAATTCATGCTACTATAAGGAAGAATTTGGTGCCAATTTTTAAGGATCAATTTGAAGAGGGCGCAACTTATGTTTTGGAGAAATTCATGGTCGCCCAAAATGATCCTACATTCAAGACGACAAACCATAAGTACAAATTGAACTTTATGGGAGGAACTAATGTTTTCAAGATCAATGCTGCTGAGATCCCTCGCATGTATTTCAACTTTACGTCATTGCTTGAGATATTGGCTGCCCAAAAGGAAGATCGTCTACTTGATGTCATTGGTCATGTCGTTGAGAAGGACACTGTTAAGGAAAATGAGAAGAATGGTAAAACTAACAAGGTCATGGACGCGACTTTAGAGGATTTGCAGGGGAATAAAATACATTGCGCACTATGGGATGACTATGCTGTCAAAATGCAAAAATGCTTGGATGCTCATGACGCCTCACTTCCTGTTGTAGTTGTCTTTCAACTCTGCAAGCTTAAGAAGTATTACGGTGCTATGGGCATCTCTAATGCTTTTTATGGTACGAAAATGTTGTTGAATCCAAATTTACCTGAAGTTTCTGATTATATAGAGAGAATGAATGGTGGTGATGTCGAGCTCACTCAAGTTGTAAGTCAGATGAGCGGCCCATCTATCCTGTCTTTGTCTGATGATTTACTTCAAACTCAGAGGATGACCAATGAGGACTTGCTTGAGACTTCTGAGAAATGTGTTGCAACTGTGTTGGCAAGAACATGTGAGCTGGAAATTGATGCTGGATGGTTATATCGTGCATGTAGCAAATGTGCAACTAGGATTACTGCTATTAATGGACAACTCTATTGCGACAAATGCAGTATGCCAAGAACTGCGATTCCAAGGTTCAAAGTAAATATTCAAGTGATAGATAATACTGGCTCAACCACATTTGTTCTGTTTGATCGTGTTGTATCTCAAGTTGTCGGTAGGGCAGACAATCCTCTTGAATATCCCTCAGAGCTCAATATGTTTGTCGACAAGAGAATGCTTTTCAAGGTTGAAGTTGGTGATGCCAACCTATACCGTAACTGGCGCACCTATAGTGTTAAGAAGCTGACTATGGATGAAGAAATCATTAAGAAGTATTTAACACTGCATGGAATAAATGATATTAACGATGAAGAGGAAGCTGCTTATGAAGACCATATTGCTGGGTTAGGTGATGATGATCCCTTGGTGAATGTTGAAGGAGTTGATTCAAGTAATAAGGATGAAGTTGTTGCGGTTGATTCAGATGTGACTCCTACTAGCAAAAGTTTGGGCAAGAGATCTGCTAATAGTGTCGCAGCTTTGATTGTTGGTGATTTTGACTCGGCAGATTTTGATAGAGATGTTATCGTTGAGACTCAGTCTGAAAAAGGTGGTGGAGAAGAAGAGATTGAGAGAGAAATTTTTTTTAAAAAAAAAAAAATTCTTCTCCGGCGCGGCGGCGCCACCGTCGGTGGCTCACCGGCCACCGCACCGGAGAAGCTTCCACCACTGGAAAACCTGACCGGAACCATGGCTGAAAAGAGGAGAAAGGAGAGACTCTCTCTCTAA 1629 0.4082 MWIVPDGTSPSEIGSINMILLDEKCGKIHATIRKNLVPIFKDQFEEGATYVLEKFMVAQNDPTFKTTNHKYKLNFMGGTNVFKINAAEIPRMYFNFTSLLEILAAQKEDRLLDVIGHVVEKDTVKENEKNGKTNKVMDATLEDLQGNKIHCALWDDYAVKMQKCLDAHDASLPVVVVFQLCKLKKYYGAMGISNAFYGTKMLLNPNLPEVSDYIERMNGGDVELTQVVSQMSGPSILSLSDDLLQTQRMTNEDLLETSEKCVATVLARTCELEIDAGWLYRACSKCATRITAINGQLYCDKCSMPRTAIPRFKVNIQVIDNTGSTTFVLFDRVVSQVVGRADNPLEYPSELNMFVDKRMLFKVEVGDANLYRNWRTYSVKKLTMDEEIIKKYLTLHGINDINDEEEAAYEDHIAGLGDDDPLVNVEGVDSSNKDEVVAVDSDVTPTSKSLGKRSANSVAALIVGDFDSADFDRDVIVETQSEKGGGEEEIEREIFFKKKKILLRRGGATVGGSPATAPEKLPPLENLTGTMAEKRRKERLSL* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4454 542 Gene3D - 229 393 IPR012340 -
Mal2g4454 542 Pfam Domain of unknown function DUF223 18 102 IPR003871 -
Mal2g4454 542 CDD RPA1_DBD_B_like 113 217 - -
Mal2g4454 542 PANTHER BNAC07G49340D PROTEIN 8 393 - -
Mal2g4454 542 SUPERFAMILY Nucleic acid-binding proteins 94 219 IPR012340 -
Mal2g4454 542 SUPERFAMILY Nucleic acid-binding proteins 14 83 IPR012340 -
Mal2g4454 542 SUPERFAMILY Nucleic acid-binding proteins 250 382 IPR012340 -
Mal2g4454 542 Gene3D - 6 83 IPR012340 -
Mal2g4454 542 Pfam Replication factor-A C terminal domain 277 406 IPR013955 -
Mal2g4454 542 MobiDBLite consensus disorder prediction 507 542 - -
Mal2g4454 542 CDD RPA1_DBD_C 261 409 IPR013955 -
Mal2g4454 542 PANTHER REPLICATION FACTOR A 1, RFA1 8 393 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal2g4454 542 CDD RPA1_DBD_A_like 1 81 - -
Mal2g4454 542 Gene3D - 87 226 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4454 Mal-Chr2 90357531 90364946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4454 16 402 Core DNA Replication Machinery Family AT5G08020 23.632 5.65e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4454 - - mtr:MTR_1g105785 447.203