Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4428 ATGTTGGAGTACCTAAATTGGAGATTTAATTTTATTGAAGGAACCATTCCACTTGTTATTGGTCAACTTCTTCGATTGAGGATTTTGGATATTAAACATAACAAGCTCTCTGGAATCATACCAACAACAATTTCCAACATGTCTTCACTTAAAAAAATCTATTTATCTAATAACTCCTTATCAGGAGAAATTCCAAAAGGAATTGGTGATCTTACACAACTGAGAACGGTGGACCTTCAATTTAATCTACTCTTTGGCAACATAAAATCGACATTAATGTTCAACAACTCAGCATTACAATATTTGGCGCTTGGTTTTAATTATCTGACTGGCAATCTTCCATCAAATATTTGTCAAGGACTTCCAAACCTTAAATTGTTCTATCTTTATGGTAATGATATTTCTGGAGAGATTCCAACTATTTGGCGTCATTGCAAAGAGTTGGAAGATTTAGAGCTATCCTTCAATAACTTTGATAAAGGACGTATTCCAGCTGACATTGGAAACTTGACCAAACTTCAATATTTGTATCTTCCTAGCAACAACTTGGAGGGTGAAATTCCATTTTCCCTCTTCAATGTCTCTTCTTTGAGAGAGATCAATCTTGACAACAACAATTTAAATGGAAATCTTCCATCCGAGATGTGTCATCAACTTCCCCAACTTGAAATGTTTACCATAATGTTTAATCATTTTGAAGAAAGCATTCCACGATCAATTGGCAACTGCACATCACTACTAATATTAATTCTACAACACAATTTTTTTACAGGTTTGATACCTATGGAGATTGGCCATCTCAATCAACTTCAGATTCTACAAATAGGAAATAACAGCTTGAGTGGATCTGTTCCTTCAAAACTCTTCAACATTTCAACATTGAAATATTTGCATCTTGAGCTAAATTCTCTCTCAGGCATGCTTCCATCCAATATGGGATTTGACCTTCCTAATCTAAAAGAGCTACACCTGTACAAAAACAAATTTGTCGGAAAAATTCCAAATAGTATATCCAATGCTTCAAACCTCATCATAGTTGATTTGAGTTGGAATGAATTTAGTGGAATTATACCCAACACTTTTGGAAATTTAAGATTCCTGAAATCACTCATTATAGGTGCCAATACTAATTTGACATTAATAGATGATTCTCTTGAATTTAACTTCCTCACTTCACTGACAAGTTGCACTAAACTTACACATCTTGAAGTATCAGGAAATAGTTTACTGTCAAAACTTCCCAAGTCCATTGGAAACTTATCTTTAGAAAACTTTTGGGCAAATTCTTGTGGAATTAGTGGAAATATTCCACTAGAAATCGGAAATATGAGCAACCTGATTCGCCTATCTCTGAGCAAGAATGATCTAAGTGGACCAATCCCAACTACAATTAAAGGGTTACATAAGCTTCAGTCTTTGAAACTTGAATACAATAGACTGCAAGGATCCATCACTAATGATCTTTGTGAATTTAGGAGTTTGAGTGAGTTGTATTTAACAAGCAATAAGCTTTTTGGAGTGTTACCAACATGCTTGGGAAATATGAGTTCTCTTAGAAATTTTCGCATTGGATCTAATAGGTTGACCTCTGAGATTCCTTCCTCCTTTTGGAATCTCAAAGATATTTTAGAGGTCAATTTATCATCCAATGCCTTAATTGGAAATCTTGCACCTGAGATTAAGAATTTGAGAGCTGTTGTAATATTAGATTTATCAAGAAATCAAATTTCAAGCAACATTCCTACAACCATCAGTTTCTTGAAAACTTTACAAACTCTCTCCTTGGAATATAACAAATTGAAAGGTTCTATCCCAACTTCAATTGGTGAAATGGTAAGCCTCAGCTTCTTGGACTTGTCTCAAAATCTTATAATTGGTGTGATCCCAAAATCTTTAGAGTCACTTTCTTCTCTTAAATACATAAATTTGTCATACAATAGATTGCAAGGAGCGATTCCTGATGGAGGACCTTTTAAAAAATTTACAGTTCAATCTTTCATGCATAATGAAGCACTTTGTGGAAGTGCTAGGTTAGAAGTACCTCCTTGTGATGATATACAGATTAGGAAAAAGTCGATGACAAAGATGTTACTAATCAAAATCTTACTACCCATGATTGTGTTATCCATTTTGATTGTTGCATGCATAATACATCGAATGCATAAAAGGAAAAAGGTTGAAAATCAACTTGAAAGGGATTTAGCAACTGATTTAGGAGTTTCAAGAAGGATTTCATATTATGAGCTTGTGCAAGCAACTAATGGATTTAGTGCGAGTTACTTACTTGGAACGGGGAGCTTTGGCTCAGTGTATCAGGGAATACTTTCTACAGGGAAGATGGTTGCAATTAAAGTGCTTGACTTGAGTTTGGAAGCAACATCAAGAAGCTTTGAGGCAGAATGCAATGCAATGCGCAATCTCCGACATCGGAATCTTGTTGAGATTATTACAAGTTGTTCAAACATGGATTTCAAATCTTTGGTGATGGAGTTTATGTCAAATGGAAGTGTGGAAAAATGGTTATACTCAGATAACTATTGTTTAGATTTCTTGCAGAGGTTGAATATAATGATAGATGTGGCATCTGCATTGGAGTATCTCCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTAAAGCCTAGTAATGTGTTACTGGATACAAATATAGTTGCACATGTCAGTGATTTTGGAATTTCCAAACTCTTGGATGAAGGGCATTCTAAAACTCATACCGCGACTTTAGCTACTCTCGGCTATGTTGCACCAGAGTATGGATCTAAGGGAGTCATTTCTGTTAAAGGAGATGTGTACAGCTACGGAGTAATGCTAATGGAAATCTTCACAGGAAAGAAGCCAACAAATGAAATGTTTGTAGAAGAATCAACCATAAAAACTTGGATTAGCGAGTCAATGCCTAATTCAGTTATGGAAGTTGTGGATTACAATTTAGTCTCACAACATGGGAATGAAACTCGTGAAATTTTAGCCCATGTATCATCTATTTTCGATTTAGCATTGAGTTGTTGCGTAGATTCACCAGAAGCAAGAGTTAATATGATAGATGTAACTGCAGCATTGATCAAAATTAAGACCTTGTACATCTAG 3111 0.3504 MLEYLNWRFNFIEGTIPLVIGQLLRLRILDIKHNKLSGIIPTTISNMSSLKKIYLSNNSLSGEIPKGIGDLTQLRTVDLQFNLLFGNIKSTLMFNNSALQYLALGFNYLTGNLPSNICQGLPNLKLFYLYGNDISGEIPTIWRHCKELEDLELSFNNFDKGRIPADIGNLTKLQYLYLPSNNLEGEIPFSLFNVSSLREINLDNNNLNGNLPSEMCHQLPQLEMFTIMFNHFEESIPRSIGNCTSLLILILQHNFFTGLIPMEIGHLNQLQILQIGNNSLSGSVPSKLFNISTLKYLHLELNSLSGMLPSNMGFDLPNLKELHLYKNKFVGKIPNSISNASNLIIVDLSWNEFSGIIPNTFGNLRFLKSLIIGANTNLTLIDDSLEFNFLTSLTSCTKLTHLEVSGNSLLSKLPKSIGNLSLENFWANSCGISGNIPLEIGNMSNLIRLSLSKNDLSGPIPTTIKGLHKLQSLKLEYNRLQGSITNDLCEFRSLSELYLTSNKLFGVLPTCLGNMSSLRNFRIGSNRLTSEIPSSFWNLKDILEVNLSSNALIGNLAPEIKNLRAVVILDLSRNQISSNIPTTISFLKTLQTLSLEYNKLKGSIPTSIGEMVSLSFLDLSQNLIIGVIPKSLESLSSLKYINLSYNRLQGAIPDGGPFKKFTVQSFMHNEALCGSARLEVPPCDDIQIRKKSMTKMLLIKILLPMIVLSILIVACIIHRMHKRKKVENQLERDLATDLGVSRRISYYELVQATNGFSASYLLGTGSFGSVYQGILSTGKMVAIKVLDLSLEATSRSFEAECNAMRNLRHRNLVEIITSCSNMDFKSLVMEFMSNGSVEKWLYSDNYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDTNIVAHVSDFGISKLLDEGHSKTHTATLATLGYVAPEYGSKGVISVKGDVYSYGVMLMEIFTGKKPTNEMFVEESTIKTWISESMPNSVMEVVDYNLVSQHGNETREILAHVSSIFDLALSCCVDSPEARVNMIDVTAALIKIKTLYI* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4428 1036 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 44 158 - -
Mal2g4428 1036 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 148 245 - -
Mal2g4428 1036 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 222 1033 - -
Mal2g4428 1036 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 66 - -
Mal2g4428 1036 Pfam Leucine Rich Repeat 342 364 IPR001611 GO:0005515
Mal2g4428 1036 Pfam Leucine Rich Repeat 398 420 IPR001611 GO:0005515
Mal2g4428 1036 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 44 158 - -
Mal2g4428 1036 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 148 245 - -
Mal2g4428 1036 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 222 1033 - -
Mal2g4428 1036 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 1 66 - -
Mal2g4428 1036 Gene3D Ribonuclease Inhibitor 1 217 IPR032675 -
Mal2g4428 1036 ProSitePatterns Protein kinases ATP-binding region signature. 762 784 IPR017441 GO:0005524
Mal2g4428 1036 Gene3D Ribonuclease Inhibitor 218 375 IPR032675 -
Mal2g4428 1036 SMART LRR_typ_2 316 340 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 563 587 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 23 46 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 267 291 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 611 634 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 341 363 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 491 514 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 194 218 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 515 538 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 635 659 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 121 144 IPR003591 -
Mal2g4428 1036 SMART LRR_typ_2 47 71 IPR003591 -
Mal2g4428 1036 Pfam Protein kinase domain 761 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal2g4428 1036 SUPERFAMILY L domain-like 424 674 - -
Mal2g4428 1036 ProSiteProfiles Protein kinase domain profile. 756 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal2g4428 1036 Gene3D Transferase(Phosphotransferase) domain 1 832 1034 - -
Mal2g4428 1036 SUPERFAMILY Protein kinase-like (PK-like) 740 1028 IPR011009 -
Mal2g4428 1036 SUPERFAMILY RNI-like 2 306 - -
Mal2g4428 1036 SUPERFAMILY L domain-like 314 411 - -
Mal2g4428 1036 SMART serkin_6 756 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal2g4428 1036 Gene3D Phosphorylase Kinase; domain 1 739 831 - -
Mal2g4428 1036 Gene3D Ribonuclease Inhibitor 376 691 IPR032675 -
Mal2g4428 1036 SMART LRR_sd22_2 170 196 - -
Mal2g4428 1036 SMART LRR_sd22_2 267 293 - -
Mal2g4428 1036 SMART LRR_sd22_2 121 153 - -
Mal2g4428 1036 SMART LRR_sd22_2 563 582 - -
Mal2g4428 1036 SMART LRR_sd22_2 611 637 - -
Mal2g4428 1036 SMART LRR_sd22_2 71 90 - -
Mal2g4428 1036 SMART LRR_sd22_2 443 469 - -
Mal2g4428 1036 SMART LRR_sd22_2 316 342 - -
Mal2g4428 1036 SMART LRR_sd22_2 396 422 - -
Mal2g4428 1036 SMART LRR_sd22_2 23 49 - -
Mal2g4428 1036 Pfam Leucine rich repeat 172 232 IPR001611 GO:0005515
Mal2g4428 1036 Pfam Leucine rich repeat 492 552 IPR001611 GO:0005515
Mal2g4428 1036 Pfam Leucine rich repeat 567 624 IPR001611 GO:0005515
Mal2g4428 1036 Pfam Leucine rich repeat 25 84 IPR001611 GO:0005515
Mal2g4428 1036 ProSitePatterns Serine/Threonine protein kinases active-site signature. 875 887 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4428 Mal-Chr2 89324792 89331961 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4428 432 672 Receptor kinase-like Gene Family AT3G47570 30.453 9.49e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mal2g4428 Pkinase 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4428 - K13420 mtr:MTR_6g040210 1229.54