Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4420 ATGAACAACACTATTCCTGATTGGAATTTTGGGATTGATAGTTTTGTCACCAATCAAAAGAAGCAACCTATGGGGCTGGACCATGAACTTGTGGAGCTTCTATGGCAGAATGGTCATGTAGTATTGAATAGCCAAACAAATAAGAAACAACTTGTGAATACAAATACAATCAACTCAAGACAAGTTCATAAGAATCTTCAATCAACATCTTTAAGCAACTTGTATCAAGATGATGAAACTGTTTCATGGATTCAACAATACCCTATTGAGGATCCACTTGAACAAGAATTATGTTCAAACCTTTTATCTGAAATTCCACCTTGTAATGTTGAGTCTTACAATTCACAACCGACGAATACAAAACCGCCTTTTGTTCAGGAATTCTCAGGAATTCCTATGTCGGCTCCGAGGTTTCATCCACATGTACCCGATTCATCGCAAAGAAACAATGATTTATGTGGATCAAGCAAGGTTGTAAACTTTTCTCACTTTTCAAGACATCCCAATGTTACTTTAGCATCTACTAACGGAGATGCAAATTTTAGAGACAAAATTACGGGTAATCTGTCACAATGCGATATTAGAGAGTGTTCGACGATGACAGTTGGTTCGAGTTATTGTGGAAGCAACCAAGTCCAACAAGATCCGGATGTAAGCAGGGTATCAAGCAATGGTGTTTGGACTACTACTTTATCGGCCGAGCCTGAAAAAGTCAGAGATGATGTTCAGAGAACAATTCCTCGGCATGAGAATGGGAAATCGGAGATGTTGGAACCTGCTTTTACTTCATCTTCTGGTGGTTCGGGAAGCAGCCTTGGAAAAACTTGTTCCTTATCTACAAGAAGTCATGACAAAAAGAGGAAAGTGATGGATGTTGAAGATTCAATGGAACAAAGCGAGGATACTGAACTTAAATCAGCCGTGCGGAAAAAGGCGTCACAGCGGTCAGGGTCGGCTCGAAGGAACCGCGCTGCTGAAGTGCATAATCTTTCAGAACGGAGGCGAAGAGATAGGATTAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGTAAGACAGACAAGGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTACAACTTCAGATGATGTGGATGGGATCTGGCATGACACCAATGATGCTACCAGGTTTTCAGAACTATATGTCACAAATGGGTATGGGAATGACTACGCCTTCGTTTCCTCCACTTCAAAATCCGATGCAATTACCAAGAATGCCTCTGGATCCGTCCGTTTCTTCGTCTCAGGCGCCAAACCAGACATTAACGTGCCAAAATCCTATTTTAGGTGCCTTTAACTATCAAAATCAGATGCAAAATCCTGCTCTTTCGGAGCAATACGCTCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAGCTGTACAAAATAGTCAAACAATGATTCCAACCATCAATAGCAATGGACCAATGAGTGGAACAGCAAACATTAATGATGCTGTGAGTGGCAAAATGGGTTAA 1560 0.4071 MNNTIPDWNFGIDSFVTNQKKQPMGLDHELVELLWQNGHVVLNSQTNKKQLVNTNTINSRQVHKNLQSTSLSNLYQDDETVSWIQQYPIEDPLEQELCSNLLSEIPPCNVESYNSQPTNTKPPFVQEFSGIPMSAPRFHPHVPDSSQRNNDLCGSSKVVNFSHFSRHPNVTLASTNGDANFRDKITGNLSQCDIRECSTMTVGSSYCGSNQVQQDPDVSRVSSNGVWTTTLSAEPEKVRDDVQRTIPRHENGKSEMLEPAFTSSSGGSGSSLGKTCSLSTRSHDKKRKVMDVEDSMEQSEDTELKSAVRKKASQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQMMWMGSGMTPMMLPGFQNYMSQMGMGMTTPSFPPLQNPMQLPRMPLDPSVSSSQAPNQTLTCQNPILGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQAVQNSQTMIPTINSNGPMSGTANINDAVSGKMG* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4420 519 MobiDBLite consensus disorder prediction 257 278 - -
Mal2g4420 519 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 501 IPR031066 -
Mal2g4420 519 MobiDBLite consensus disorder prediction 498 519 - -
Mal2g4420 519 MobiDBLite consensus disorder prediction 498 512 - -
Mal2g4420 519 MobiDBLite consensus disorder prediction 247 335 - -
Mal2g4420 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Mal2g4420 519 SMART finulus 329 378 IPR011598 GO:0046983
Mal2g4420 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 389 IPR036638 GO:0046983
Mal2g4420 519 Coils Coil 329 349 - -
Mal2g4420 519 MobiDBLite consensus disorder prediction 279 310 - -
Mal2g4420 519 PANTHER TRANSCRIPTION FACTOR PIF5 1 501 - -
Mal2g4420 519 MobiDBLite consensus disorder prediction 321 335 - -
Mal2g4420 519 CDD bHLH_AtPIF_like 323 386 - -
Mal2g4420 519 Pfam Helix-loop-helix DNA-binding domain 327 373 IPR011598 GO:0046983
Mal2g4420 519 Gene3D - 318 380 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4420 Mal-Chr2 88924166 88927000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4420 8 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.098 1.16e-57 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal2g4420 HLH 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4420 K16189 - gmx:100800166 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g4420 2 88924166 88927000 Mal2g4420 2 88924166 88927000 ECH