Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4345 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGATTGGAAGAGCTGAAAAATGTAGGAGATTCAATGGATTTGAGGCTTGGTGAGGCTTCTGATTCATTGGAAAAATCAGTTCAAGATTCAGGAAAGGAAGATTCAAAAGCTGTGTCGTCGTCACCTACTGGATCGTTGAAACGATCGCGTTTGCAAAATGGATCGCAGAATATGATTTGCTCGGTTGATGGATGCAACTCTGATCTTAGTGATTGTAGAGAGTATCATAAGCGCCATAGGGTGTGCGAAAAGCATTCCAAAACTCCTGTTGTGTTGGTTGGAGGTAAGCAGCAGAGGTTCTGCCAACAATGCAGCAGGTTTCATTCACTTGCGGAGTTTGATGAAGTTAAGAGGAGTTGCAGGAAACGTCTAGATGGACATAATAAGCGCAGAAGGAAACCTCAACCACCTTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGTCCTAGAATCTTGCACTTTGGTAGCCCTCAGACATATGTGAATCCTATTATGAGAAACATTTGGCCTGCAACTTCCATAACTGAAGCTGAATCTGGTTACGATCATCACCGACTATTGTATCGATTCGACAAACATAAACAGGATAAGGGACATCCTCATTGGCAAGAAGTTCTCCCTAAATCCGGCGATGTTAATAAAGCAGCGCCTGGAACTCCTATCAGTCATCCTATTCGCGGTGCCGTTGGTTCATCCGCGGGTGAAAAAGGCGGTAGGAAGCTCTCTTCTGATGGCAAGCCTGGATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTTCAAACACAAAGTTCAGAGTTGAGTTTGATGCAGTCAAGCATCAACAACAGTCCAACACAATCTTCATCTGGAACGGTGCATTTTGATGCTTCGAAGGAGTACTCGTACTCCGGAAAGGCGAAAGATAAGTCGAATGGACCGGTATTTGTTCTAGATGGAAACACAACAAACCTTCATTGCAATGGGATGCTGCAAATGGGGCCTAACGGTTTGATGGAAAATGATAACTCAATGACACTTCCGTTCTTCTGGGAGTAA 1095 0.4393 MDWDWKEFAWDPSGLEELKNVGDSMDLRLGEASDSLEKSVQDSGKEDSKAVSSSPTGSLKRSRLQNGSQNMICSVDGCNSDLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLAEFDEVKRSCRKRLDGHNKRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPQTYVNPIMRNIWPATSITEAESGYDHHRLLYRFDKHKQDKGHPHWQEVLPKSGDVNKAAPGTPISHPIRGAVGSSAGEKGGRKLSSDGKPGSFDSGCALYLLSTLQTQSSELSLMQSSINNSPTQSSSGTVHFDASKEYSYSGKAKDKSNGPVFVLDGNTTNLHCNGMLQMGPNGLMENDNSMTLPFFWE* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4345 364 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 364 IPR044817 GO:0003677
Mal2g4345 364 Gene3D - 64 134 IPR036893 GO:0003677|GO:0005634
Mal2g4345 364 MobiDBLite consensus disorder prediction 32 65 - -
Mal2g4345 364 ProSiteProfiles Zinc finger SBP-type profile. 70 147 IPR004333 GO:0003677
Mal2g4345 364 SUPERFAMILY SBT domain 71 152 IPR036893 GO:0003677|GO:0005634
Mal2g4345 364 MobiDBLite consensus disorder prediction 46 65 - -
Mal2g4345 364 MobiDBLite consensus disorder prediction 233 263 - -
Mal2g4345 364 Pfam SBP domain 73 146 IPR004333 GO:0003677
Mal2g4345 364 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 9 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4345 Mal-Chr2 85358163 85360405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4345 69 198 SBP-box Gene Family AT5G50670 55.882 7.71e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mal2g4345 SBP 9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4345 - - lja:Lj1g3v3847150.1 548.125