Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4221 ATGGGACTGATGAAAGCACTGCTCTTCAGTTCACTCTGCTGCCTCAAGTGGTCGGTTAATGCTGTTGATGCTTTAAAGTTTACCAACACAGCAGTTAGTTCGACATCAAAAAAGAAAGAATATCTAATTTCACTTCCTGATATAAAAACAGCATATTCACCACAGATGAATTTTTGTCCTTTTTATCATAAAATAGAGAATGCTCGAAGGAGAGACGTTAGAAAGTTCACCTACAGCTTTGTGCCATGCCCTGATTTTAAAAAGGGGGATTGCAGACATGCGGATATGTGTGAGTTTGCTCATGGAGTATTCGAGAGCTGGCTACATCCAGATCGGTATCGCACAAGGCTCTGCAAAGATGGTACTAGTTGTAACCGAAAGCTGCGTCCATTGTATGTATCTACTGGATCTGCTGTTCCTTCACGCCGATCAGGTGCATCTGCTCCTAATGTCATAGACATGACTGCTGCAATGTGCCTTTATCTTGGTTCACTATCATCAATCTTTTCGATGTATCCATCTACTTTTGCACAGCCTTTATCTCCATATACAAATGGTATCTCTCACTCAAATAATGCTTGGCCAGCTCTTCAATTACCAGGAAGCAATATTCAAATTAGTCGTTTGCGATCTTCTCTTAGTGCCCGTGATATTCCATTTGAAGACTTCAACAATATGTTCCAATACATTGATGGTCAGCAGCACATGCTAAATGATGACTTGAGCTGTTTCTCACAGCCCCATCCTGGTGCTATTTCAGTGAGATCCCGTACTGGAAAACCTGATTGGTCCGTAAACGGAAATGACTTTGGTCGATCACAAAGATATACCTCTTTTCAGCATGGAAACAGTGGCGAAGAGCCTGATCTATCTTGGGTCCAATCTCTTGTCACCTAA 897 0.4181 MGLMKALLFSSLCCLKWSVNAVDALKFTNTAVSSTSKKKEYLISLPDIKTAYSPQMNFCPFYHKIENARRRDVRKFTYSFVPCPDFKKGDCRHADMCEFAHGVFESWLHPDRYRTRLCKDGTSCNRKLRPLYVSTGSAVPSRRSGASAPNVIDMTAAMCLYLGSLSSIFSMYPSTFAQPLSPYTNGISHSNNAWPALQLPGSNIQISRLRSSLSARDIPFEDFNNMFQYIDGQQHMLNDDLSCFSQPHPGAISVRSRTGKPDWSVNGNDFGRSQRYTSFQHGNSGEEPDLSWVQSLVT* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4221 298 Gene3D - 77 129 - -
Mal2g4221 298 SMART c3hfinal6 77 103 IPR000571 GO:0046872
Mal2g4221 298 ProSiteProfiles Zinc finger C3H1-type profile. 77 104 IPR000571 GO:0046872
Mal2g4221 298 PANTHER UNKEMPT FAMILY MEMBER 51 255 IPR045234 -
Mal2g4221 298 PANTHER UNKEMPT FAMILY MEMBER 256 297 IPR045234 -
Mal2g4221 298 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 51 255 - -
Mal2g4221 298 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 256 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4221 Mal-Chr2 78468876 78469891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4221 30 239 C2H2 Transcription Factor Family AT5G12850 48.996 3.31e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal2g4221 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4221 - - mtr:MTR_3g435680 315.464