Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4193 ATGAAAAGATCTTGTTCATTGTTGTCTAGCAATGATGATGATGCTAAGACGGTGATAAACGATGAAGTCTATGTTCAAGAATCAACATACAAATGCAGTACTTGTGGCAAGACTTTCAGCAATGGAAAAGCATTGGGTGGTCACCGAAGATCTCACGTTCTGAAGAAGAAATCTAATCATCATCAATCGCAAGGTAGTAATTTCGATGATGATAGTTATGATGATGGTGAAGAAATTGATGGCAAAAAGAAACTAACTTGTTATGTTTGCAAGAAGAAGTTTCCAACAAAGAATGCTTTGTATGGTCACATGAGATCTCATCCTGATAGGGTTTCTAAAGGAGTTAGTCCTCCTTCAAATCTTGATATTCAAAAGCCTTCTTCATCCAACAATTATAATTCTTCTACTCAACAGAATGAAGAAGATGATATTGGTAAGTTATCTTTGCCAAAATGGAAAAAGAAAGATAAAAGAGGTAGAAAATGTATTGGTAGTGCTGAAGCTGCAATAAATCTTTTGCATCTTAGGTCTGATAAGTACTTTCGTACTTTATCTATTGCTGAGCCAAAGAGTCCTGAGTGTCTATTTCCAATTAAGAAAATAAATTTTTGGCTTGGTGAGTCATCATCAAATGTGAATGGTAAGATTGGAAACAAAAGTGATGGGAATGGTGATGAGAGTGACAATAGTGTTGAGCAACTAAACAGAAGCATAGGTCCATCAGAATCTACATTTGAAGAGACAGCAAGCAATCATTCTGAACAAAAAAGTATGGATTTTGATTTGAATGTGTCATATGTTATGGAGGACTAA 813 0.3506 MKRSCSLLSSNDDDAKTVINDEVYVQESTYKCSTCGKTFSNGKALGGHRRSHVLKKKSNHHQSQGSNFDDDSYDDGEEIDGKKKLTCYVCKKKFPTKNALYGHMRSHPDRVSKGVSPPSNLDIQKPSSSNNYNSSTQQNEEDDIGKLSLPKWKKKDKRGRKCIGSAEAAINLLHLRSDKYFRTLSIAEPKSPECLFPIKKINFWLGESSSNVNGKIGNKSDGNGDESDNSVEQLNRSIGPSESTFEETASNHSEQKSMDFDLNVSYVMED* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4193 270 MobiDBLite consensus disorder prediction 101 152 - -
Mal2g4193 270 Pfam C2H2-type zinc finger 87 109 - -
Mal2g4193 270 Pfam C2H2-type zinc finger 30 52 - -
Mal2g4193 270 SMART c2h2final6 30 52 IPR013087 -
Mal2g4193 270 SMART c2h2final6 85 107 IPR013087 -
Mal2g4193 270 MobiDBLite consensus disorder prediction 212 257 - -
Mal2g4193 270 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Mal2g4193 270 Gene3D Classic Zinc Finger 75 145 - -
Mal2g4193 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Mal2g4193 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Mal2g4193 270 Gene3D Classic Zinc Finger 26 52 - -
Mal2g4193 270 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 25 169 IPR044653 GO:0003700
Mal2g4193 270 SUPERFAMILY beta-beta-alpha zinc fingers 29 107 IPR036236 -
Mal2g4193 270 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Mal2g4193 270 MobiDBLite consensus disorder prediction 53 74 - -
Mal2g4193 270 MobiDBLite consensus disorder prediction 117 143 - -
Mal2g4193 270 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 25 169 - -
Mal2g4193 270 MobiDBLite consensus disorder prediction 227 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4193 Mal-Chr2 77053210 77054022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4193 32 118 C2H2 Transcription Factor Family AT2G26940 33.333 3.93e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal2g4193 zf-C2H2_6 4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4193 - - mtr:MTR_6g081160 289.656