Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4102 ATGGACGATAATTCATCGTCAGTGCAATGGATGAATAAGAATAGTGAAATTCCAATGGCTTGTGAGAGAAACAACGCTGCAACAAATCCTAACAACACAAGGAAGAGAAAGTTGGATGAAATCATGAAAGAGGAAAAACTGAACCGGTTTGAAACGATCTTCTCAAAACGTAAATTCGCACTCTTCAATAAAGTAATAGAGTTATCTATTCTATGCCAATCGAAAGCTGCACTCATCATCACATCACAAGACAACAACAAACTCTATGCATCTGGCTACCCTAACTGCGACACAGTCATTCAACGATTTCTGACCGGACGTATGGACTACGACGAGAAAAAAATGCAAGAAGATGATGACATTGTTGAAACCCTAAGGCTTGAATATGAAGCGATTCAAGAAAAACTTAAAGAAGAGAATGAGAAATTGCAAGCTGTCACTGAGGAGGCACATTCTAATTTCCCTGATTGGTGGAATCATCATTCTATTGATGATATGGATTTAGGATCTCTTCAAGAATTTAAGTCTTCTTTGGAAAAATTGAAGCTTAATTTGGTTGCAGCAAAGAAGTTCAAAGATTGCCAATTATGGCAGTAG 597 0.3752 MDDNSSSVQWMNKNSEIPMACERNNAATNPNNTRKRKLDEIMKEEKLNRFETIFSKRKFALFNKVIELSILCQSKAALIITSQDNNKLYASGYPNCDTVIQRFLTGRMDYDEKKMQEDDDIVETLRLEYEAIQEKLKEENEKLQAVTEEAHSNFPDWWNHHSIDDMDLGSLQEFKSSLEKLKLNLVAAKKFKDCQLWQ* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4102 198 SMART madsneu2 33 94 IPR002100 GO:0003677|GO:0046983
Mal2g4102 198 SUPERFAMILY SRF-like 40 105 IPR036879 GO:0003677|GO:0046983
Mal2g4102 198 Coils Coil 122 153 - -
Mal2g4102 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 52 89 IPR002100 GO:0003677|GO:0046983
Mal2g4102 198 Gene3D - 46 126 IPR036879 GO:0003677|GO:0046983
Mal2g4102 198 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 28 190 - -
Mal2g4102 198 PANTHER MADS BOX PROTEIN 28 190 - -
Mal2g4102 198 ProSiteProfiles MADS-box domain profile. 34 85 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4102 Mal-Chr2 72116047 72116769 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4102 33 191 Type I MADS-box Gene Family AT5G60440 28.402 2.84e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g4102 SRF-TF 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4102 - - mtr:MTR_2g045020 172.555