Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4100 ATGGACGTGCAATGGATGAATAAGAATAGTGAAATTTCAATGGCTTGTGAGAGAAAAAACGCTGCAACAAATCCTAACAACACAAGGAAGAGAAAGTTGGATGAAATCAAGAAAGAGGAAAAACTGAACCGCTTTGAAACGATCTTCTCAAAACGCAAATTTGCACTTTTCAACAAAGTAATAGAGTTATCTATTCTATGCCAATCGAAAGCTGCACTCATCATCACATCACCAGACAACAACAAACTCTATGCATGTGGCTACCCTAACTGCGACACAGTCATTCAACGATTTCTGACCGGACGTATGGACTACGACGAGAAAAAGATGCAAGAAGATGATGACATTGTTGAAACCCTAAGGCTTGAATATGAAGCGATTCAAGAAAAACTTAAAGAAGAGAATGAGAAATTGCAAGCTGTCACTGAGGAGGCACATTCTAATTTCCCTGATTGGTGGAATCATCATTCTATTGATGATATGGATTTAGGATCTCTTCAAGAATTTAAGTCTTCTTTGGAAAAATTGAAGCTTAATTTAGTTGCAGCAACAGAAGCAAAGAAGTTCAAAGATTGCCAATTATGGCAGTAG 591 0.3756 MDVQWMNKNSEISMACERKNAATNPNNTRKRKLDEIKKEEKLNRFETIFSKRKFALFNKVIELSILCQSKAALIITSPDNNKLYACGYPNCDTVIQRFLTGRMDYDEKKMQEDDDIVETLRLEYEAIQEKLKEENEKLQAVTEEAHSNFPDWWNHHSIDDMDLGSLQEFKSSLEKLKLNLVAATEAKKFKDCQLWQ* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4100 196 Coils Coil 166 186 - -
Mal2g4100 196 PANTHER MADS BOX PROTEIN 22 189 - -
Mal2g4100 196 SUPERFAMILY SRF-like 31 100 IPR036879 GO:0003677|GO:0046983
Mal2g4100 196 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 22 189 - -
Mal2g4100 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 85 IPR002100 GO:0003677|GO:0046983
Mal2g4100 196 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Mal2g4100 196 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Mal2g4100 196 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Mal2g4100 196 SMART madsneu2 28 89 IPR002100 GO:0003677|GO:0046983
Mal2g4100 196 Gene3D - 41 126 IPR036879 GO:0003677|GO:0046983
Mal2g4100 196 ProSiteProfiles MADS-box domain profile. 29 80 IPR002100 GO:0003677|GO:0046983
Mal2g4100 196 Coils Coil 117 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4100 Mal-Chr2 72081291 72082078 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4100 30 189 Type I MADS-box Gene Family AT5G60440 29.586 6.86e-15 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g4100 SRF-TF 5.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4100 - - mtr:MTR_2g045020 192.971