Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4099 ATGGCTTCTGAGGGAAACAACACTAACACTGCAACAACCCCCAACATAGGGAAGAGAAAGATTGATGAAATCACAAGGCAAGGAAAGATTGAGGAAAGTTTGAACAAAGCTTTCCCAACTTTCCCACAACGCAAACTCGGACTTTTCAACAAAGTAACAGAACTCTCTATTCTTTGCCAATCAAAAACTGCACTCATCATCACAACAACGGACAACAAGCTCTATGAATGTGGCTATCCTAATTGCGACACCGTCATTCAACAATTTCTCGACGGAAAAAATACCATGGTCGACAATGAGAAAGAGAAGGAAGAGGAGGAGATTATTGAAACCCTAAGGCTTGAATATGAGGCAATTGAAGATAAACTTCAAGAAGAGAAAAAGAATTTGCAAGCCTTCATTGATCATGCAGAGAAGAGTAATTCTAATTTGCCTTATTGGTGGAATGATTCTATTGATGATATGGGTTTAGAACCTCTTAAGGTATTTAAGACTTCTTTGGAAAATTTGAAGCTCAATTTGGTTGCATCCACACAAGAAAAGAAGGTAATGATTGAATCCAGTTAA 567 0.3792 MASEGNNTNTATTPNIGKRKIDEITRQGKIEESLNKAFPTFPQRKLGLFNKVTELSILCQSKTALIITTTDNKLYECGYPNCDTVIQQFLDGKNTMVDNEKEKEEEEIIETLRLEYEAIEDKLQEEKKNLQAFIDHAEKSNSNLPYWWNDSIDDMGLEPLKVFKTSLENLKLNLVASTQEKKVMIESS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4099 188 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Mal2g4099 188 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Mal2g4099 188 SMART madsneu2 16 80 IPR002100 GO:0003677|GO:0046983
Mal2g4099 188 PANTHER MADS BOX PROTEIN 29 183 - -
Mal2g4099 188 Gene3D - 40 118 IPR036879 GO:0003677|GO:0046983
Mal2g4099 188 SUPERFAMILY SRF-like 36 91 IPR036879 GO:0003677|GO:0046983
Mal2g4099 188 Coils Coil 102 140 - -
Mal2g4099 188 ProSiteProfiles MADS-box domain profile. 40 81 IPR002100 GO:0003677|GO:0046983
Mal2g4099 188 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 29 183 - -
Mal2g4099 188 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4099 Mal-Chr2 72068348 72068914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4099 40 171 Type I MADS-box Gene Family AT5G60440 31.159 1.02e-17 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g4099 SRF-TF 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4099 - - cam:101507050 193.356