Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4098 ATGGATAATAGTGAAATTCCAATGGCTTGTGAGAGAAACAACGCTGCAACCAAACCCAACAACACGAAGAGAAAGTTGGATGAAATCAAGAAAGAGGAAAAACTGAACCGGTTTGAAACGATCTTCTCAAAACGCAAATTTGCACTTTTCAACAAAGTAATAGAGTTATCTATTCTATGCCAATCGAAAGCTGCACTCATCATCACATCACCAGACAACAACAAACTCTATGCATGTGGCTACCCTAACTGCGACACAGTCATTCAACGATTTCTGACCGGACGTATGGACTACGACGAGAAAAAGATGCAAGAAGATGATGACATTGTTGAAACCCTAAGGCTTGAATATGAAGCGATTCAAGAAAAACTTAAAGAAGAGAATGAGAAATTGCAAGCTGTCACTGAGGAGGCACATTCTAATTTCCCTGATTGGTGGAATCATCATTCTATTGATGATATGGATTTAGGATCTCTTCAAGAATTTAAGTCTTCTTTGGAAAAATTGAAGCTTAATTTAGTTGCAGCAACCGAAACAAAGAAGTTTAAAGATTGCCAATTATGGCAGTAG 570 0.3789 MDNSEIPMACERNNAATKPNNTKRKLDEIKKEEKLNRFETIFSKRKFALFNKVIELSILCQSKAALIITSPDNNKLYACGYPNCDTVIQRFLTGRMDYDEKKMQEDDDIVETLRLEYEAIQEKLKEENEKLQAVTEEAHSNFPDWWNHHSIDDMDLGSLQEFKSSLEKLKLNLVAATETKKFKDCQLWQ* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4098 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 78 IPR002100 GO:0003677|GO:0046983
Mal2g4098 189 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Mal2g4098 189 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Mal2g4098 189 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Mal2g4098 189 Coils Coil 110 141 - -
Mal2g4098 189 MobiDBLite consensus disorder prediction 1 21 - -
Mal2g4098 189 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 18 182 - -
Mal2g4098 189 SMART madsneu2 22 82 IPR002100 GO:0003677|GO:0046983
Mal2g4098 189 Gene3D - 34 141 IPR036879 GO:0003677|GO:0046983
Mal2g4098 189 PANTHER MADS BOX PROTEIN 18 182 - -
Mal2g4098 189 Coils Coil 159 179 - -
Mal2g4098 189 ProSiteProfiles MADS-box domain profile. 22 73 IPR002100 GO:0003677|GO:0046983
Mal2g4098 189 SUPERFAMILY SRF-like 24 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4098 Mal-Chr2 72026231 72028510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4098 23 182 Type I MADS-box Gene Family AT5G60440 28.994 1.47e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g4098 SRF-TF 5.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4098 - - cam:101507050 179.874