Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4096 ATGGCTTCTGAGGGAAACAACACAAATACTGCAACAACCCCCAACACAAGGAATAGAAAGATTGATGAAATCACAAGGCAAGGAAAGATTGAGGAAAGTTTGAACAAAGCTTTCCCAACTTTCCCACAACGCAAACTCGGACTTTTCAACAAAGTAACAGAACTCTCTATTCTTTGCCAATCAAAAACTGCACTCATCATCACAACAACGGACAACAAGCTCTATGAATGTGGCTACCCTAATTGCGACACCGTCATTCAACAATTTCTCGACGGAAAAAATACCATGGTCGACAGTGAGAAAGAGAAGGAAGAGGAGGAGATTATTGAAACCCTAAGGCATGAATATGAGGCAATTGAAGATAAACTTGAAGAAGAGAAAAAGAATTTGCAAGCTATCATTGATCATGCAGAGAAGAGTAATTCTAATTTGCCTTGTTGGTGGAATGATTCTATTGATGATATGGGTTTAGAACCTCTTAAGGTATTTAAGACTTCTTTGGAAAATTTGAAGCTCAATTTGGTTGCATCCCCACAAGAAAAGAAGGTAATGATTGAATCCAGTTAA 567 0.381 MASEGNNTNTATTPNTRNRKIDEITRQGKIEESLNKAFPTFPQRKLGLFNKVTELSILCQSKTALIITTTDNKLYECGYPNCDTVIQQFLDGKNTMVDSEKEKEEEEIIETLRHEYEAIEDKLEEEKKNLQAIIDHAEKSNSNLPCWWNDSIDDMGLEPLKVFKTSLENLKLNLVASPQEKKVMIESS* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4096 188 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Mal2g4096 188 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Mal2g4096 188 SMART madsneu2 16 80 IPR002100 GO:0003677|GO:0046983
Mal2g4096 188 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 14 183 - -
Mal2g4096 188 SUPERFAMILY SRF-like 36 91 IPR036879 GO:0003677|GO:0046983
Mal2g4096 188 MobiDBLite consensus disorder prediction 1 21 - -
Mal2g4096 188 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 76 IPR002100 GO:0003677|GO:0046983
Mal2g4096 188 Coils Coil 102 140 - -
Mal2g4096 188 ProSiteProfiles MADS-box domain profile. 40 81 IPR002100 GO:0003677|GO:0046983
Mal2g4096 188 MobiDBLite consensus disorder prediction 1 18 - -
Mal2g4096 188 Gene3D - 40 119 IPR036879 GO:0003677|GO:0046983
Mal2g4096 188 PANTHER MADS BOX PROTEIN 14 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4096 Mal-Chr2 71982076 71982642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4096 40 171 Type I MADS-box Gene Family AT5G60440 32.374 5.93e-19 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g4096 SRF-TF 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4096 - - cam:101507050 189.504