Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4058 ATGTGTGATGTTGAATTCATGTTGAGGATATTAAATGAATTTCACGCGGTGTCTTGGAAGATCAAGGGCCAGGGACAGAATGCTGATAGAAGTCATAGTGAAAAAAAGTTTTATATGAACATGGAGGCACAATACGAGAGTGATGTTGAACCAGATGATGCCAGTAGGAAGCAAAAGGAGGCAACTGCTGATGATCAGGTCGGTACAAGAGAGTCAAATGTAAAGACTACTGCTGGAAGGTGGAGTTTATCATTTTCGAAAGACTGCCAGCCTATGCACCCTCAGAATGGCTCTGAATCTGGGCATGAATCAAAAAGTGGATCAGACTATAGAAATGAAGATGAATCTGAAGATAATTCATCGGAAGGACGAGGAGAAAGATTAGGCTCAGAAGATGAACAAAAGGATTCAGGAAAAGGTGAAAGGGGACATTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATAAGTATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCGGTGCATTCCAGGGGTCTTCGTCAATCCACGGGATCGAATTCATCATGCCTTCAACGGAAGTCTACTAATGTCAACAGGCGTGTGCATAGGAAATCTAGGATTTTAGATGATGCTGAAGATGACGATGATGATGCTGATTATGAAGAAGATGAATCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCTGGAACTAGCTGTCGTGGTGCAAACAAGTATAAAGATTGGGAAGGGGAAGACTCAGATGAAGCTGATGATAGTGATGAGGACATAGATGTTTCGGATAATGATGATTCATACTTATATAAGAAGGCTAAGGGAAGGCAACAAGGTAAATTTGGACAAAGTGTAAGATCAACCCGAGATCGTAAAGCATCATACACGGCATCCAGTCGACAAAGAAGAGTTAAATCATCTTTTGAAGATGAAGATGATGACTCTACAGCAGAGGATTCTGACAGTGAGAGTGATGAAGATTTCAAAAGCTTGAAGAAGAGAGGTGTGCGTGTACGCAAGAATAATGGCCGATCATCTGCACCCTCAAGTTTTTCTAGGCACAGCAATGAGGTTCGCTCTTCTAGTAGGACTGTTAGGAAAGTATCATATGTTGAAAGTGATGAAAGTGAAGGAGCTGATGAAGGAAAGAAGAAATCTCAAAAGGAAGAAATTGAAGAGGACGATGGGGACTCCATTGAAAAGGTGCTTTGGCATCAGCCGAAGGGCATGGCTGCAGAGGCTCAAAGGAATAATCAATCCATGGAGCCTGTTTTAATGAGTCACTTATTTGATTCTGAACCTGATTGGAACAATATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCATTGTCAGTGGAAGTCTTTTGTTGAGCTGCAAAATCTCAGTGGTTTCAAAAAAGTTTTGAATTATACCAAGAGAATGACAGAGGAAATCAGGTACAGGATGGGAATATCGAGAGAAGAGATTGAGGTCAACGATGTGAGTAAGGAGATGGACATAGATATTATCAAGCAAAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATTCGCAAAAACAATTCTGGTAATGTTATTCCAGAGTATTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACCTGGGAGAAGGACATTGATATTGCTTTTGCTCAACACGCTATTGATGAATATAAGGCTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATTTTCAGCGTAGGAGGAGCAAAGCAAGTTTGCGGAAACTCGATGAACAACCTGAATGGTTGAAGGGTGGAAAGCTTCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTTGTTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTCCAGTCAGTATCTATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACCTTATCAAACTGGGCCAAGGAATTCAGAAAGTGGCTTCCTGAGCTGAATGTTATTGTTTATGTTGGTACTCGTTCAAGTAGAGAGGTTTGCCAACAATATGAATTTTGTAATGAAAAAAAGGCTGGCAAGCCAATTAAATTCAATGCACTGTTGACTACGTATGAAGTAGTTCTGAAGGATAAGGCCGTTCTCTCGAAGATCAATTGGAACTATCTGATGGTGGATGAGGCTCATAGACTTAAAAACAGCGAGGCACAGTTGTATACCGCACTTTCAGAATTCAACACAAAGAACAAGTTGCTGATCACTGGCACTCCACTGCAAAATAGCGTTGAAGAGCTATGGGCTTTGCTACACTTCCTTGATTCTGATAAGTTCAAGAGCAAAGATGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCTAATCTTCATATGGAATTGAGGCCTCACATGCTTCGAAGAGTTATCAAAGATGTGGAAAAATCATTACCCCCCAAAATTGAGCGTATTCTTAGGGTTGATATGTCTCCTCTGCAGAAGCAGTATTATAAGTGGATTTTGGAACGCAACTTTCGTGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTAAATATTGTAGTAGAATTGAAGAAGTGCTGTAATCATCCCTTCTTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGAAAGTAGTGACAGCAGTAAACTAGAGAAAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTACTTGTCAGATTGCATGAAACAAAGCATCGTGTTCTCATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGCACAGTATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGAAGTACAAAATCTGAGCTGCGACATCAGGCAATGGATCATTTCAATGCACCAAATAGTGATGATTTTTGCTTCCTTCTTTCAACGCGAGCAGGTGGTTTGGGTATCAACCTTGCCACAGCAGACACTGTTATAATATTTGACTCAGATTGGAATCCTCAAAATGATCTGCAGGCAATGAGTCGAGCTCATAGAATTGGGCAGCAGGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTTGACCACTTGGTTATTCAAAAACTAAATGCAGAGGGTAAACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGCTATTTTGACAAAAATGAGCTCTCAGCAATCTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAGAGCAAGAAGCGACTGTTAAGTATGGACATAGATGAGATTCTCGAAAGAGCAGAGAAGGTTGAAGAAAAGGAAAATGGGGGTGAACAGGCACATGAGTTATTAAGTGCCTTTAAGGTTGCAAATTTTTGTAATGATGAAGATGATGGTAGTTTCTGGAGCCGGTGGATAAAGGCTGATGCTGTCGCTCAAGCAGAGAATGCTCTTGCTCCACGTGCTGCAAGAAATATCAAAAGCTATGCAGAGGCTGATCAATCTGACAGAAGTAATAAAAGAAAAAAGAAGGAAAATGAACCAACTGAACGGATTCCGAAACGACGAAAAGCAGATTATTCAGCTCATGTAATATCAATGATTGATGGAGCATCTGCCCAAGTCAGAAGCTGGTCATATGGGAATTTGTCTAAACGAGACGCACTCCGGTTTTCTCGTTCAGTTATGAAATTTGGGAATGAGAGCCAAATCAATTTGATTGCTGCTGAGGTTGGTGGTGCAGTAGAAGCAGCTCCGCTCAAAGCACAAACGGAACTCTTCAATGCTTTGATTGATGGTTGTAGAGAAGCAGTGGAAGTTGGAAGTCTGGATCTGAAGGGGCCTTTGCTGGATTTCTATGGTGTCCCAGTGAAGGCAAATGAGTTACTTATCCGTGTTCAAGAACTTCAACTGCTAGCAAAGCGCATTAGTCGGTATGAGGATCCTATTGCACAATTCCGTGTTCTAACATATCTCAAACCTTCAAACTGGTCAAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAGTACATTACCATGGATATGGTAATTGGGAAATGATAAGGTTGGATGAAAGGCTTGGCCTTACAAAAAAAATTGCACCAGTGGAACTTCAGCATCATGAAACTTTCTTGCCACGAGCTCCGAATTTGAAAGACCGAGCTAATGCCCTGTTGGAGCAAGAACTTCTTGGTGTGAAAAATGCCTATAGCAAAGTTGGAAGGAAGACTTCCAAGAAAGAGAGAGAGCATCTTGTAGACATCTCTTCGTCGCGTAGGCAGGAGAAAAAGAAAAACATTGGTTCTTCTAAAGTTAATGACCAAATGAGAAAGGATAGACTTCAGAAACCTCTAAAAGTTGAACCTATTGTAAAGGAGGAGGGTGAAATGTCTGATGATGACGATGAAGTATATGAGCATTTCAAGGAGGGAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAGACTTTGAAACGTCTTCACAGGTTGCAGACAACCAGTGCAAGTCTTCCGAAGGAAAAGGTGCTTTCAAAAATCCGCAACTACCTGCAGCTTCTTGGGCGAAGGATAGATCAAATTGTCTCAGAACAGGAAGACGAACCCCACAAGCAAGATAGAATGACTACGAGATTGTGGAAGTATGTTTCTACCTTTTCCCATCTTTCAGGGGAGAGGCTTCACCAAATTTATTCAAAACTTAAACTGGAGCAAAATGCGGTTGGGGTTGGCTCCTCTCTTCCAAATGGGTCAGTATCTGGTCCATTTAGCAGAAATGGAAACCCTAATAATCATTCTAATTCATTCCCTCGCCCTATGCAGAGGCAAAGGAGGTCCCAAAATGTGACAGCCCACCCAATGCGTGAACAAACTAATGACACGGGCATGTCTGAGGCATGGAAACGAAGAAGAGCCGAAAATGATGGTTGTTTCCAGGCTCAGCCACCACCTCAAAGAATCACGAGTAATGGAATTCGACCGCTGGATCCTAACTCAATGGGTATCCTTGGGGCAGGACCATCTCAACGCTTTGGTGCGAAACAACTTAAGTCTCAACCGGCTGGGTTTCCGTCAAGACAAGAATTCTCTTCAGTAGTCGAGTAG 5220 0.414 MCDVEFMLRILNEFHAVSWKIKGQGQNADRSHSEKKFYMNMEAQYESDVEPDDASRKQKEATADDQVGTRESNVKTTAGRWSLSFSKDCQPMHPQNGSESGHESKSGSDYRNEDESEDNSSEGRGERLGSEDEQKDSGKGERGHSDVPAEEMLSDKYYEQDGEEQSDSVHSRGLRQSTGSNSSCLQRKSTNVNRRVHRKSRILDDAEDDDDDADYEEDESDEDDPDDADFEPGTSCRGANKYKDWEGEDSDEADDSDEDIDVSDNDDSYLYKKAKGRQQGKFGQSVRSTRDRKASYTASSRQRRVKSSFEDEDDDSTAEDSDSESDEDFKSLKKRGVRVRKNNGRSSAPSSFSRHSNEVRSSSRTVRKVSYVESDESEGADEGKKKSQKEEIEEDDGDSIEKVLWHQPKGMAAEAQRNNQSMEPVLMSHLFDSEPDWNNMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKRMTEEIRYRMGISREEIEVNDVSKEMDIDIIKQNSQVERIIADRIRKNNSGNVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHAIDEYKAREAAMSVQGKMVDFQRRRSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVVLADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPELNVIVYVGTRSSREVCQQYEFCNEKKAGKPIKFNALLTTYEVVLKDKAVLSKINWNYLMVDEAHRLKNSEAQLYTALSEFNTKNKLLITGTPLQNSVEELWALLHFLDSDKFKSKDEFVQNYKNLSSFNENELANLHMELRPHMLRRVIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFRDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSESSDSSKLEKIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYMSLRGFQFQRLDGSTKSELRHQAMDHFNAPNSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGKLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKENGGEQAHELLSAFKVANFCNDEDDGSFWSRWIKADAVAQAENALAPRAARNIKSYAEADQSDRSNKRKKKENEPTERIPKRRKADYSAHVISMIDGASAQVRSWSYGNLSKRDALRFSRSVMKFGNESQINLIAAEVGGAVEAAPLKAQTELFNALIDGCREAVEVGSLDLKGPLLDFYGVPVKANELLIRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGVHYHGYGNWEMIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELLGVKNAYSKVGRKTSKKEREHLVDISSSRRQEKKKNIGSSKVNDQMRKDRLQKPLKVEPIVKEEGEMSDDDDEVYEHFKEGKWMEWCQDVMVEEMKTLKRLHRLQTTSASLPKEKVLSKIRNYLQLLGRRIDQIVSEQEDEPHKQDRMTTRLWKYVSTFSHLSGERLHQIYSKLKLEQNAVGVGSSLPNGSVSGPFSRNGNPNNHSNSFPRPMQRQRRSQNVTAHPMREQTNDTGMSEAWKRRRAENDGCFQAQPPPQRITSNGIRPLDPNSMGILGAGPSQRFGAKQLKSQPAGFPSRQEFSSVVE* 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4058 1739 Pfam SNF2-related domain 622 891 IPR000330 GO:0005524|GO:0140658
Mal2g4058 1739 MobiDBLite consensus disorder prediction 369 399 - -
Mal2g4058 1739 CDD CD1_tandem 396 476 - -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 49 66 - -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 22 399 - -
Mal2g4058 1739 ProSiteProfiles Chromo and chromo shadow domain profile. 398 477 IPR000953 -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 1194 1221 - -
Mal2g4058 1739 Pfam Chromo (CHRromatin Organisation MOdifier) domain 512 566 IPR023780 -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 206 229 - -
Mal2g4058 1739 Coils Coil 1117 1137 - -
Mal2g4058 1739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 827 1108 IPR027417 -
Mal2g4058 1739 Gene3D - 513 565 - -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 67 103 - -
Mal2g4058 1739 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 615 787 IPR014001 -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 1618 1666 - -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 1702 1739 - -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 343 368 - -
Mal2g4058 1739 Gene3D - 385 511 - -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 294 311 - -
Mal2g4058 1739 SMART chromo_7 509 568 IPR000953 -
Mal2g4058 1739 Coils Coil 1063 1083 - -
Mal2g4058 1739 Gene3D - 1330 1441 - -
Mal2g4058 1739 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 96 1657 - -
Mal2g4058 1739 SUPERFAMILY Chromo domain-like 395 478 IPR016197 -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 1444 1477 - -
Mal2g4058 1739 CDD SF2_C_SNF 910 1044 - -
Mal2g4058 1739 SMART DUF4208_2 1500 1606 IPR025260 -
Mal2g4058 1739 Pfam Helicase conserved C-terminal domain 920 1033 IPR001650 -
Mal2g4058 1739 ProSiteProfiles Chromo and chromo shadow domain profile. 511 575 IPR000953 -
Mal2g4058 1739 SMART ultradead3 599 795 IPR014001 -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 104 170 - -
Mal2g4058 1739 CDD CD2_tandem 509 565 - -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 171 190 - -
Mal2g4058 1739 SMART helicmild6 949 1033 IPR001650 -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 27 41 - -
Mal2g4058 1739 Gene3D - 594 833 IPR038718 -
Mal2g4058 1739 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 824 IPR027417 -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 1717 1739 - -
Mal2g4058 1739 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 923 1074 IPR001650 -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 248 264 - -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 1618 1669 - -
Mal2g4058 1739 Pfam Domain of unknown function (DUF4208) 1512 1605 IPR025260 -
Mal2g4058 1739 SUPERFAMILY Chromo domain-like 490 566 IPR016197 -
Mal2g4058 1739 Gene3D - 834 1064 IPR027417 -
Mal2g4058 1739 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 96 1657 - -
Mal2g4058 1739 MobiDBLite consensus disorder prediction 1192 1221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4058 Mal-Chr2 69371569 69394426 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4058 625 1060 RAD5 or RAD16-like Gene Family AT1G02670 25.099 2.94e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal2g4058 SNF2_N 2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4058 K11367 - gmx:100808039 2587.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0263 4 1461159 1465079 Mal2g4058 2 69371569 69394426 PCT