Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g4053 ATGACAAGCACGATTCTCCGAAGATCCTCTTCCATATTCTCACGGCGTTTCTTCGCCGCCGCCGTCGAACAACTTCCAATCTCTCACCACAGCCTCCGTCACCACATCCTCCCCTTCTCCTCCGCCTTCTACGGCAATGGAGGAGACAGATTCTTTCACGCGAAATCTGGACCGTTGAACTTCCACTCGTCTCTGGTTTCTCGTGGTGCGCAGCTTGCTGTGGATTACGATCACGCGGAACACGATGAAGGTTGCAGTGTCAATGGCGATGAAGGATTGGAGATCGCAAAGCTTGGAATTTCTAAGGAGATCGTGAATGCGTTGGGGAAGAAAGGGATCGCGAAGCTTTTTCCTATTCAGAGAGCTGTGCTGGAACCTGCGATGCAAGGGAGGGATATGATTGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCCTTTGGGATACCCATCTTGGATAAGATTATTAAGTTTAATGCTAAGAATGGGAAAAGAAGGGATCCTTTGGCTTTGGTGTTGGCTCCGACAAGAGAACTTGCACGGCAGGTTGAAAAGGAATTCAATGAGGCTGCACCTAACCTGGAAACAATTTGTCTTTATGGGGGTATGCCTATTCAGCAACAAATTAGCAAACTTGGTGGTGGCGTAGATATTGTAGTTGGCACACCTGGACGTGTTATTGATCTTCTCAAAAGAGGTTCACTGAAACTGAAGGATGTTAATTATGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCGGTGGAGATTATCTTGCAGAAGTTGCCTTCAAAGCGTCAAACTCTTATGTTCTCGGCAACAATGCCTTCTTGGATAAAGAATCTTACACGCAATTACCTAAACAACCCCTTAACAATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCTATTGCATCTAATGCCTATTCTAAAGCAGGAATTCTTGTACCTCTTATAAAAGAACATGGTAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGTCTATCACATATTATGGCAAAAAGCCTTAAATGTGAGGCTTTGCATGGAGATATTTCACAAACTCAGAGAGAAAGAACTCTTACTGGCTTTAGAAACAGCTATTTCAATGTTTTAGTGGCAACTGATGTTGCTTCCCGTGGGCTTGATATACCTAATGTTGATCTTGTAATACATTATGAACTTCCAAATAATTCAGAGATATTTGTTCATCGATCTGGACGAACAGGACGCGCTGGGAAGAAAGGAACTGCTATTCTTGTCCACACAGAAAATCAATCCAGGGATTTAAAGACAATTGAGCGAGATGTTGGATGTAAATTCACAGAGTTACCTAAGATTGCTGTTGAAGGTGGATCAGCAGACATGTTTGGCAGCATGAGTGGTGGTCGATACGGCTCTTCGGGAGGTAGGGATCGTCGATCAGGCGGTACAGGTTTTGGTGGTAATTCTGGATCTGGCCAACCGGGCTATGGGAAATCCAGTGGTTTTGGTGGCTCTGGTTCAAGGAAGTCAGGAGGGGGATTTGGGGAATTTTCTGGTAAAACGGATAAATACGGTGGTGGAGGATTTAGCAGTTCAGGTCGTTCCAGTGGCTTTGGAAATTTTGGCTCAGGTAAATTTGGTAGATTCTGA 1692 0.4421 MTSTILRRSSSIFSRRFFAAAVEQLPISHHSLRHHILPFSSAFYGNGGDRFFHAKSGPLNFHSSLVSRGAQLAVDYDHAEHDEGCSVNGDEGLEIAKLGISKEIVNALGKKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIKFNAKNGKRRDPLALVLAPTRELARQVEKEFNEAAPNLETICLYGGMPIQQQISKLGGGVDIVVGTPGRVIDLLKRGSLKLKDVNYVVLDEADQMLQVGFQEAVEIILQKLPSKRQTLMFSATMPSWIKNLTRNYLNNPLTIDLVGDSDQKLADGISLYSIASNAYSKAGILVPLIKEHGKGGKCIVFTQTKRDADRLSHIMAKSLKCEALHGDISQTQRERTLTGFRNSYFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILVHTENQSRDLKTIERDVGCKFTELPKIAVEGGSADMFGSMSGGRYGSSGGRDRRSGGTGFGGNSGSGQPGYGKSSGFGGSGSRKSGGGFGEFSGKTDKYGGGGFSSSGRSSGFGNFGSGKFGRF* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g4053 563 Pfam DEAD/DEAH box helicase 117 286 IPR011545 GO:0003676|GO:0005524
Mal2g4053 563 PANTHER RNA HELICASE 3 555 - -
Mal2g4053 563 SMART ultradead3 112 315 IPR014001 -
Mal2g4053 563 Gene3D - 94 302 IPR027417 -
Mal2g4053 563 SMART helicmild6 352 432 IPR001650 -
Mal2g4053 563 MobiDBLite consensus disorder prediction 478 563 - -
Mal2g4053 563 CDD DEADc 104 299 - -
Mal2g4053 563 Gene3D - 315 471 IPR027417 -
Mal2g4053 563 MobiDBLite consensus disorder prediction 498 520 - -
Mal2g4053 563 CDD SF2_C_DEAD 312 439 - -
Mal2g4053 563 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 298 IPR014001 -
Mal2g4053 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 453 IPR027417 -
Mal2g4053 563 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 471 IPR001650 -
Mal2g4053 563 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 555 - -
Mal2g4053 563 Pfam Helicase conserved C-terminal domain 325 432 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g4053 Mal-Chr2 69212175 69217963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g4053 98 464 Eukaryotic Initiation Factors Gene Family AT3G19760 33.243 1.52e-65 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g4053 - - gmx:100802553 704.131