LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g3919	ATGGATTGTTCATCATATATCAACACTTCCTTGGATCTCAATATTATTCCCTATAGAGCTCATGAAGAAGTTCCAAAGAAGGAGGTGGAAAGCAACTTTTTCTCCTTGGGGATGACCAAGTTTTCTGTGAAAGATGAGTCCATTAATGAATTGGAGGAGGAACTGAAAAGGGTGACTATAGAAAACAAGAAATTGGTGGAAATGCTCTCAGTGGTTTGTGAGAACTACAACACTTTGAGAAGCCATTTGATGGACTATATGAGGAGAAATCCTGAGAAAGAAGTTAGCACATCATCAAAGAAAAGGAAATCTGAAAGCAGCAATAATAACAATAGTAATTTGATTGTAATTAACAATGGAAATTCCGAGAGTAGCTCTACCGATGAAGAATCATGCAAGAAACCTAGGGAAGAAGAAAATCTTAAAGCCAAAATTTCAAGAGCTTATGTTAGAACTGAAGCTTCTGATACAAGCCTTATTGTGAAGGATGGATACCATTGGAGGAAATACGGACAAAAAGTTACTAGAGATAACCCTTGTCCAAGAGCTTATTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTGCAAAGAAGTATAGATGATCAATCTATGCTTGTTGCTACTTATGAAGGGGAGCATAATCATCCTCAACCACCTCAAATAGAGTCAACATCCGGTTCCGGCCGTGCCGTGAGCTTAAGTTCGGTACCTTGTTCAGCGTCTCTTAGCTCATCAGAACCAAAAGTTGTTACACTTGACTTAACCAATTCTAAGAGTAGTAAAGATTCCAAGAATATTGAACCAAGGAAAGATTCACCTAAGGTACCAAAGAATTTGGTGGAACAAATGGCTACTTCATTGACAACTGATCCTAATTTTAGAGCAGCACTTGTTGCAGCCATTTCAGGAAGATTGGTGCACAATAATTAA	942	0.3832	MDCSSYINTSLDLNIIPYRAHEEVPKKEVESNFFSLGMTKFSVKDESINELEEELKRVTIENKKLVEMLSVVCENYNTLRSHLMDYMRRNPEKEVSTSSKKRKSESSNNNNSNLIVINNGNSESSSTDEESCKKPREEENLKAKISRAYVRTEASDTSLIVKDGYHWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSIDDQSMLVATYEGEHNHPQPPQIESTSGSGRAVSLSSVPCSASLSSSEPKVVTLDLTNSKSSKDSKNIEPRKDSPKVPKNLVEQMATSLTTDPNFRAALVAAISGRLVHNN*	314

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g3919	313	Gene3D	WRKY domain	138	223	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mal2g3919	313	ProSiteProfiles	WRKY domain profile.	156	222	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal2g3919	313	MobiDBLite	consensus disorder prediction	85	139	-	-
	Mal2g3919	313	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	1	313	IPR044810	GO:0003700
	Mal2g3919	313	SUPERFAMILY	WRKY DNA-binding domain	158	222	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Mal2g3919	313	MobiDBLite	consensus disorder prediction	221	236	-	-
	Mal2g3919	313	MobiDBLite	consensus disorder prediction	255	281	-	-
	Mal2g3919	313	MobiDBLite	consensus disorder prediction	215	236	-	-
	Mal2g3919	313	Pfam	WRKY DNA -binding domain	162	220	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Mal2g3919	313	PANTHER	TRANSCRIPTION FACTOR	1	313	-	-
	Mal2g3919	313	MobiDBLite	consensus disorder prediction	85	101	-	-
	Mal2g3919	313	MobiDBLite	consensus disorder prediction	264	280	-	-
	Mal2g3919	313	Coils	Coil	41	68	-	-
	Mal2g3919	313	MobiDBLite	consensus disorder prediction	102	126	-	-
	Mal2g3919	313	SMART	WRKY_cls	161	221	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g3919	Mal-Chr2	65957302	65959621	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal2g3919	4	313	WRKY Transcription Factor Family	AT1G80840	51.402	7.04e-96	284

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Mal2g3919		WRKY	2.2e-23	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g3919	-		-	gmx:100807966	452.595