Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3855 ATGTTTAGCTTGGTTTGCTGTAATTTTGGCTCTTCTGGTCCCATGGATGGTATTCACGGTGGTGATTCGCAGATGCAGATCAGTGATGGACAGCATCCTATACATATGACATATGAACATCATGGAATGCACCATATGAGCAATGGGAATGGGATGGACGATGATCAAAGTAACGGTGGTGATGGTGATTCTAAATGCGGTGGAAGTGAGAATGCGGAAGGTGAAGTCCCCTCCAACAATGGAAATCTTCATGACAATCACAATTTAATGATGGATCAAGGGAATGATATTGGGGATCAGCTTACTTTGTCTTTTCAGGGACAGGTTTATGTCTTTGACTCTGTGTCACCAGAAAAGGTTCAATCTGTACTGCTGTTACTCGGAGGCCGTGAAGTACCTCCAACAGTACCTTCCATGCCAATTTCTCCTGACGAAAATAATCAGGGATTCACTGGTACTCCACAAAAATTCAGCGTCCCTCAGAGATTAGCTTCATTGATTAGATTTCGTGAAAAGCGGAAGGAACGAAATTTTGACAAAAAAATTCGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAAAGAAATAAAGGCCAATTTACATCTGCCAAGTCCAATCATGATGAGTCTGCATCAGCTGAAATGAATTGCGGAACAAGTGAAGGTTTGATGGCAGACAATAATGGATCACAACAGCAAGATACTGTTTGTAGGCATTGTGGCATCAGTGAGAAGTGCACACCAATGATGCGGCGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTACATGGGCAAATAAGGGAGCTCTTAGGGACCTATCAAGGGCAGCACCCTTGCAGGCGCACAATTCTCTGTTAAACAAGAACGAGAATAAAAATTCAGAGGCCAATCAGATAGTGCTTAGAGATGCTGCTGAATCCTCATGA 942 0.4321 MFSLVCCNFGSSGPMDGIHGGDSQMQISDGQHPIHMTYEHHGMHHMSNGNGMDDDQSNGGDGDSKCGGSENAEGEVPSNNGNLHDNHNLMMDQGNDIGDQLTLSFQGQVYVFDSVSPEKVQSVLLLLGGREVPPTVPSMPISPDENNQGFTGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNHDESASAEMNCGTSEGLMADNNGSQQQDTVCRHCGISEKCTPMMRRGPEGPRTLCNACGLTWANKGALRDLSRAAPLQAHNSLLNKNENKNSEANQIVLRDAAESS* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3855 313 ProSiteProfiles CCT domain profile. 162 204 IPR010402 GO:0005515
Mal2g3855 313 Pfam CCT motif 162 204 IPR010402 GO:0005515
Mal2g3855 313 ProSitePatterns GATA-type zinc finger domain. 238 265 IPR000679 GO:0006355|GO:0043565
Mal2g3855 313 CDD ZnF_GATA 237 279 IPR000679 GO:0006355|GO:0043565
Mal2g3855 313 ProSiteProfiles Tify domain profile. 94 129 IPR010399 -
Mal2g3855 313 SMART tify_2 94 129 IPR010399 -
Mal2g3855 313 Pfam tify domain 100 128 IPR010399 -
Mal2g3855 313 Pfam GATA zinc finger 238 273 IPR000679 GO:0006355|GO:0043565
Mal2g3855 313 PANTHER GATA TRANSCRIPTION FACTOR 28 16 302 IPR045280 GO:0006355
Mal2g3855 313 SMART GATA_3 232 285 IPR000679 GO:0006355|GO:0043565
Mal2g3855 313 MobiDBLite consensus disorder prediction 73 93 - -
Mal2g3855 313 Gene3D - 228 297 IPR013088 GO:0006355|GO:0008270
Mal2g3855 313 ProSiteProfiles GATA-type zinc finger domain profile. 232 288 IPR000679 GO:0006355|GO:0043565
Mal2g3855 313 MobiDBLite consensus disorder prediction 41 93 - -
Mal2g3855 313 PANTHER GATA TRANSCRIPTION FACTOR 24 16 302 - -
Mal2g3855 313 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3855 Mal-Chr2 64915975 64919744 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3855 15 310 Tify Gene Family AT1G51600 60.738 3.72e-130 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal2g3855 CCT 9.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3855 - - gmx:100812262 460.685