Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3833 ATGGAGCTTCCAAATGAAAGTGGAGAAGGATCTTCTCAAAAGAAGATGGGAAGAGGGAAAATTGAAATCAAGAGGATTGAGAACACTACAAATAGGCAAGTCACTTTTTGCAAACGCCGCAACGGATTGTTGAAGAAAGCCTATGAATTATCTGTTCTTTGTGATGCTGAAGTTGCTCTTGTTGTGTTCTCAACTCGCGGTCGCTTGTATGAGTATGCCAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCATGTGCTGCTTCCACTAACGCAGAATCTGTATCTGAAGCCAATACCCAATTTTACCAGCAAGAATCATCCAAATTGCGTAGACAGATTCGAGATATTCAGAATCTAAATAGACACATCCTTGGTGAAGCTCTCGGATCTCTGAGTCTCAAGGAACTAAAGAATCTCGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACATTGTTTGCTGATGTAGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCATAACAATTATCTACGAATAGCTGAACATGAGAGAGCTCAACAACAGCAACAAAATTTGATGCCAGATCAAACAATGTGTGATCAGTCCTTACCTTCACAAACATATGACCGAAATTTCTTTCCGGTAAATCTTCTTGGATCAGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCTCTCCAACTTGTGTGA 726 0.405 MELPNESGEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRIAEHERAQQQQQNLMPDQTMCDQSLPSQTYDRNFFPVNLLGSDQQQYSRQDQTALQLV* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3833 241 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Mal2g3833 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Mal2g3833 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 12 235 - -
Mal2g3833 241 Pfam K-box region 100 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal2g3833 241 Gene3D - 28 100 IPR036879 GO:0003677|GO:0046983
Mal2g3833 241 Coils Coil 175 195 - -
Mal2g3833 241 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Mal2g3833 241 ProSiteProfiles K-box domain profile. 102 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal2g3833 241 PANTHER MADS BOX PROTEIN 12 235 - -
Mal2g3833 241 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Mal2g3833 241 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Mal2g3833 241 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Mal2g3833 241 MobiDBLite consensus disorder prediction 1 21 - -
Mal2g3833 241 SUPERFAMILY SRF-like 17 93 IPR036879 GO:0003677|GO:0046983
Mal2g3833 241 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Mal2g3833 241 Coils Coil 105 125 - -
Mal2g3833 241 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3833 Mal-Chr2 64197121 64206471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3833 1 241 MADS-box Gene Family AT3G58780 69.076 8.96e-117 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal2g3833 K-box 6.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3833 K09264 - gmx:100817239 417.157