Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3778 ATGTCACCTAGTTTCATCTTCGACCCTCCCAGCGACGAAGAAATCGAACTATCCGAACACGATTCAGACGAATCCGATTCAGAACAATCACAATCAGAACCTGAATCAGAATCAGGAGAAGAGTCAGAAGATGAACCAGAGCGGCGCAAAGAACCGCGTGTTTCAAAGAAGAAAACACAGTCTCCATGGGACTTTACAAAATACTCTGAATCAGTAGCCGAAGAACACGCTCGCAGAAGCACCACATCAGTAGACGATAAAATCTCAGCCGTCAGACAACGCTTGGCTCCGGTCGTTGCTTTGCCTGACAGCGAAGATGACAGTAGCTCTGAATCCGAAGCTGATAAACAAGAAGATTATAGACCAGAAGAAGAAGATGAAGAAGAGGGTAATGCTGGTGAAAACAAATCCTTTTTTGCTCCTTCTGCTGGAACGTCTTTCAGTGCTGATTCCTTCTTGCAACTCAATTTGTCTCGCCCTTTACTCCGGGCTTGTGAGGTCTTGGGGTATTCTAAACCAACACCAATTCAGGCGGCTTGTATACCATTAGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACTGGATCGGGAAAGACAGCTGCATTTGCATTACCTACTTTAGAGAGATTGCTGTTCCGTCCAAAACGTGTGCATGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGCCCAAGTTCAAAGTATGATTGAGAAGCTTGCTCAATTTACTGATATAAGGTGTTGCTTGATTGTCGGCGGTCTGTCAACAAAGGTGCAAGAGGCTGCCTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATTCTATGTCGGTGGATTTAGATGATCTTTCTGTTTTAATCCTTGATGAAGCAGATCGTCTTTTGGAGCTAGGATTTAATGCTGAAATTCAGGAACTTGTTCGCGTGTGTCCCAAAAGAAGGCAGACCATGTTGTTTTCAGCAACCATGACCGAGGAGGTTGATGATCTTATTAAACTTTCCCTATCAAAACCCCTGCGTCTTTCTGCTGATCCATTAGCAAAACGGCCAGCATCCTTGACCGAGGAGGTGGTCAGATTAAGAAGAAAGCTTGAAGTCAATCAGGAAGCTGTTCTTCTTGCAATGTGCTCCAAAACGTTTACTTCTAAAGTGATCATTTTCAGTGGAACCAAGCAAGCCGCACATAGATTGAGGATTATATTTGGATTAGCTGGTTTGAAAGCTGCCGAGCTTCATGGAAATCTTACTCAGGCCCAACGTCTTGAAGCTTTGGAACAATTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGACTTGACATTATTGGTGTTCAAACAGTTATTAATTTTGCATGTCCACGCGATCTCACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGCAGGATCTGCTGTTACATTTGTTACCGATAATGACCGGTCACTTCTAAAAGCTATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCTATCTATAGGCAAGTGGTCTAAAGTAATTCAGCAAATGGAGGATCAAATTTCTCAAGTACTTCAAGAAGAGAGGGAAGAAATGATCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCCCATAGGGATGAGATCTTCTCCCGCCCCAAAAGAACCTGGTTTGTTACAGAGAAGGAGAAGAAGCTCTCGGCAAAAGCAGCAAAGGCATCCTTGGATAAGGAAGAGGGTTCTTCTCGTAAGGTGGTTAGTGCCCAGGAGGCTGAAGACCTAAAAATGAAGGAAAAGAGGAAGCGCGAGCGAGAGAAAAATATGCCTAGAAAGAAGCGCAGGAAGTTGGAAGCAGCTAGAGAGATGTTGGAGGATGACGAGCAGGATGACAAGCCAAAAGGTAGGGGGACAGATAAGAATGAAAAGGCTGGACTGACCCTTGTTGATCTTGCATACCGACGTGCAAAAGCAGTAAAAGCCACCAAGAGGGCACTAGATTCTGGTAAGATTGTGCAGAAGCCTCAAAAGAAATCTAAAAAATCTAATCCCTCGCGAAAGACTTCTTCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGACATGAAGGATAAAAAGCCGAAACAGAGAGGCTCTGGAGTAGGAAAGAAGGCCCAGAAATCATTCAAAAGCAAGTCAAGGTACAAGAGGAAGTAG 2277 0.4471 MSPSFIFDPPSDEEIELSEHDSDESDSEQSQSEPESESGEESEDEPERRKEPRVSKKKTQSPWDFTKYSESVAEEHARRSTTSVDDKISAVRQRLAPVVALPDSEDDSSSESEADKQEDYRPEEEDEEEGNAGENKSFFAPSAGTSFSADSFLQLNLSRPLLRACEVLGYSKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRVHAIRVLILTPTRELAAQVQSMIEKLAQFTDIRCCLIVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFNAEIQELVRVCPKRRQTMLFSATMTEEVDDLIKLSLSKPLRLSADPLAKRPASLTEEVVRLRRKLEVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLRIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAELSIGKWSKVIQQMEDQISQVLQEEREEMILRKAEMEATKAENMIAHRDEIFSRPKRTWFVTEKEKKLSAKAAKASLDKEEGSSRKVVSAQEAEDLKMKEKRKREREKNMPRKKRRKLEAAREMLEDDEQDDKPKGRGTDKNEKAGLTLVDLAYRRAKAVKATKRALDSGKIVQKPQKKSKKSNPSRKTSSSRTEEMRELFQTDMKDKKPKQRGSGVGKKAQKSFKSKSRYKRK* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3778 758 MobiDBLite consensus disorder prediction 597 629 - -
Mal2g3778 758 Pfam Helicase conserved C-terminal domain 387 490 IPR001650 -
Mal2g3778 758 MobiDBLite consensus disorder prediction 106 131 - -
Mal2g3778 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 510 IPR027417 -
Mal2g3778 758 Pfam DEAD/DEAH box helicase 174 344 IPR011545 GO:0003676|GO:0005524
Mal2g3778 758 MobiDBLite consensus disorder prediction 712 738 - -
Mal2g3778 758 CDD DEADc_DDX27 161 356 - -
Mal2g3778 758 Gene3D - 363 528 IPR027417 -
Mal2g3778 758 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 355 IPR014001 -
Mal2g3778 758 Gene3D - 107 357 IPR027417 -
Mal2g3778 758 MobiDBLite consensus disorder prediction 636 668 - -
Mal2g3778 758 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 366 529 IPR001650 -
Mal2g3778 758 MobiDBLite consensus disorder prediction 43 60 - -
Mal2g3778 758 MobiDBLite consensus disorder prediction 1 140 - -
Mal2g3778 758 MobiDBLite consensus disorder prediction 12 42 - -
Mal2g3778 758 SMART helicmild6 405 490 IPR001650 -
Mal2g3778 758 PANTHER BNAA01G17110D PROTEIN 306 717 - -
Mal2g3778 758 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 301 309 IPR000629 -
Mal2g3778 758 PANTHER RNA HELICASE 306 717 - -
Mal2g3778 758 PANTHER RNA HELICASE 53 281 - -
Mal2g3778 758 PANTHER BNAA01G17110D PROTEIN 53 281 - -
Mal2g3778 758 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Mal2g3778 758 Coils Coil 614 634 - -
Mal2g3778 758 SMART ultradead3 169 370 IPR014001 -
Mal2g3778 758 Coils Coil 543 566 - -
Mal2g3778 758 MobiDBLite consensus disorder prediction 597 758 - -
Mal2g3778 758 MobiDBLite consensus disorder prediction 69 85 - -
Mal2g3778 758 CDD SF2_C_DEAD 370 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3778 Mal-Chr2 62224088 62233885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3778 107 507 Eukaryotic Initiation Factors Gene Family AT3G13920 31.281 2.20e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3778 K13181 - gmx:100791233 1043.11