Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3771 ATGTCTTTTCCAGAAAACAACAGCGATATCATTGAAGTGAGCCCTCAAATTCCAAAGAAAAAGAGGCCAAGAATTTCTGAAAACAATCAATCCAATGCACTCACATGCCCTCCTGCATTAAACAAAGAAACAGACAACATTTTCTTCAAGACTCGTATTTGTAGCAAGTTCAAGTCTGGTAACTGTAGGAAAGGTGAAAATTGCACCTATGCTCATGGAGTTGCAGAGATAAGGCAGCCACCGCCGAATTGGAAGGAGATAGCTGGTGCTCGCAACGAGGTACGTCTGCAGTTGGGGAGTTGGGATGAAGATCAGAAAATCATTCACAAGATGGAGCTGTGTAGGAAGTACTACAATGGTGAGGAATGTCCTTATGGTGATAAGTGTAGATATATTCATAGGCTTAGGGATGATTCTTTGAAATCAAGAGAGGGCTCTGCAGTAAGAATTGGAGATGGTTCTAGTAATTTGGAAGGCCATAGTGCTGTGAACAAGCCAGCAAGGGGTACTAACCAGAAGACTAAGCTGTGTCTCACGTGGCAGCAAACTGGGAGCTGTCCCTTTGGGGAGGACTGTGACTTTGCTCATGGAAAAGCAGAGTTACAAGTTCCTGGTGGAGGCAATGATGCACCTACCAGCATCCCAGCAAGTCTAGGTGTGGCAAAGGAAGAGGGGCAGGCTAAGAAGAAGCCTTTACTTTGGTGGAAATCAAACAAGAAGATCAATACTATATATGGTGATTGGATTGATGATTCACCTCTTGTTCTTCCCAACTTGCCAAGTGCAGACGAGACCTGA 798 0.4436 MSFPENNSDIIEVSPQIPKKKRPRISENNQSNALTCPPALNKETDNIFFKTRICSKFKSGNCRKGENCTYAHGVAEIRQPPPNWKEIAGARNEVRLQLGSWDEDQKIIHKMELCRKYYNGEECPYGDKCRYIHRLRDDSLKSREGSAVRIGDGSSNLEGHSAVNKPARGTNQKTKLCLTWQQTGSCPFGEDCDFAHGKAELQVPGGGNDAPTSIPASLGVAKEEGQAKKKPLLWWKSNKKINTIYGDWIDDSPLVLPNLPSADET* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3771 265 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 172 198 IPR000571 GO:0046872
Mal2g3771 265 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Mal2g3771 265 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 14 254 - -
Mal2g3771 265 MobiDBLite consensus disorder prediction 146 168 - -
Mal2g3771 265 ProSiteProfiles Zinc finger C3H1-type profile. 48 75 IPR000571 GO:0046872
Mal2g3771 265 SMART c3hfinal6 48 74 IPR000571 GO:0046872
Mal2g3771 265 SMART c3hfinal6 171 198 IPR000571 GO:0046872
Mal2g3771 265 SMART c3hfinal6 108 135 IPR000571 GO:0046872
Mal2g3771 265 Gene3D - 167 203 - -
Mal2g3771 265 Gene3D - 41 79 - -
Mal2g3771 265 Gene3D - 105 138 - -
Mal2g3771 265 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 254 IPR045877 GO:0003729
Mal2g3771 265 ProSiteProfiles Zinc finger C3H1-type profile. 108 136 IPR000571 GO:0046872
Mal2g3771 265 Pfam CCCH-type zinc finger 113 133 IPR041367 -
Mal2g3771 265 SUPERFAMILY CCCH zinc finger 171 202 IPR036855 GO:0046872
Mal2g3771 265 SUPERFAMILY CCCH zinc finger 107 137 IPR036855 GO:0046872
Mal2g3771 265 MobiDBLite consensus disorder prediction 1 36 - -
Mal2g3771 265 SUPERFAMILY CCCH zinc finger 46 79 IPR036855 GO:0046872
Mal2g3771 265 ProSiteProfiles Zinc finger C3H1-type profile. 171 199 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3771 Mal-Chr2 62087081 62088728 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3771 173 202 C3H Transcription Factor Family AT1G68200 60.000 2.68e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal2g3771 zf-CCCH 8.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3771 - - mtr:MTR_3g050390 338.191