Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3643 ATGGCATCAACAACATGTATTGTCAACAAGAATGAATTCCCTATGAAAATGGTAGCTCCTATCTCTCATTCATATCCTGAACCTCTTGCAAAATATGATGATGTTGTGGCAAATCCCAAACTCTTCATGCTTACCTTGGAGAAGCTCCATGCTTCTATGGGTACCAAGTTCATGATTCCCATTATTGGAGGAAAAGAACTAGATTTGTGTCGACTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACTGCAGCTTTCAGTTTTCCATCAACAGCAACAAATGCTTCCTATGTGCTCAGAAAATACTATTCTTCATTACTTTATCACTATGAACAAATCTACTATTTTAGAATCAATCGGTGGACCCCTGGATCTTCTGATGCTTTGCAGAATCAATCAACCATGTCAATTCCTGCTTCAATAACACAATTTTTGCAGCCTTCTCCCGGAACAAAGCCGGTTGGCTTTCAAAAGTCAGGGGCTAATGCTTCTGAATTGCCTCAAGTGTCTTTTTCAGGATCTTCACTTGTTGGTGTTATTGATGGAAAGTTTGAAAGTGGATATCTAGTTTCAGTTTCAGTAGGTTCAGAGACACTCAAAGGAGTACTATATGAGTCTCCACAAAGCATTATGATTAATAAAAGCAATATTGCATCTGCTGCATTAGGTGTCCAACGCCGCCGTCGTAGGAGGAAGAAGTCGGAAATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGTTACAATTTCTTCTTTGCTGAACAGCATGCAAGACTAAAGCTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAACTTTGGAACAACTTAAAAGAGTCTGAAAAAACAGTTTATCAAGAAATGGCCATTAAGGATAAAGAAAGGTACAAAGCAGAAATGGAGGATTATCGCGATAAAATGAAGACGAGCATTGTAATCGATGGCACGGTGCCACTACAACAACAGTTTCCGGAAGCAGATTCAGCTTTGGTGGACGTTGACATAAAAATGCACGATTCTTGTCAGACTCCTGAGGAGAGTAGTTCTGGTGAAAGTGACTATGTTGTAGATGATATCAACATGGATGCTTCTTCTGGTGGAGCAAGAGTGGATTCTGAAGCTTTGGTCGATTCAGACAAGACAACTAAGGAGGGAGTTATTGAAGTTCTTAGCCATTGTGAGGGAGAAGTGAATGCTGGAGGAATTCAACAGACTCAAAAGATGAATGAGAGCCAAAACATGTTATCCTTACTTTAG 1314 0.3988 MASTTCIVNKNEFPMKMVAPISHSYPEPLAKYDDVVANPKLFMLTLEKLHASMGTKFMIPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTAAFSFPSTATNASYVLRKYYSSLLYHYEQIYYFRINRWTPGSSDALQNQSTMSIPASITQFLQPSPGTKPVGFQKSGANASELPQVSFSGSSLVGVIDGKFESGYLVSVSVGSETLKGVLYESPQSIMINKSNIASAALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKESEKTVYQEMAIKDKERYKAEMEDYRDKMKTSIVIDGTVPLQQQFPEADSALVDVDIKMHDSCQTPEESSSGESDYVVDDINMDASSGGARVDSEALVDSDKTTKEGVIEVLSHCEGEVNAGGIQQTQKMNESQNMLSLL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3643 437 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Mal2g3643 437 SUPERFAMILY ARID-like 35 128 IPR036431 GO:0003677
Mal2g3643 437 SUPERFAMILY HMG-box 244 327 IPR036910 -
Mal2g3643 437 SMART ARID_2 33 123 - -
Mal2g3643 437 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 14 384 - -
Mal2g3643 437 MobiDBLite consensus disorder prediction 234 262 - -
Mal2g3643 437 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 384 - -
Mal2g3643 437 CDD HMGB-UBF_HMG-box 256 320 - -
Mal2g3643 437 Gene3D - 29 134 IPR036431 GO:0003677
Mal2g3643 437 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 256 323 IPR009071 -
Mal2g3643 437 Pfam HMG (high mobility group) box 256 323 IPR009071 -
Mal2g3643 437 SMART hmgende2 255 324 IPR009071 -
Mal2g3643 437 Gene3D High mobility group box domain 240 332 IPR036910 -
Mal2g3643 437 Coils Coil 305 325 - -
Mal2g3643 437 MobiDBLite consensus disorder prediction 236 250 - -
Mal2g3643 437 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
Mal2g3643 437 SMART bright_3 37 128 IPR001606 GO:0003677
Mal2g3643 437 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3643 Mal-Chr2 58256714 58259598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3643 1 356 ARID Transcription Factor Family AT1G04880 54.813 4.89e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mal2g3643 ARID 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3643 - - mtr:MTR_7g005970 799.66