LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g3498	ATGAGCAATGCTTTTTCCTCTACATCTTCTTCTTATGTGGTGCCTCGGAAAAAATATGATGTTTTTCTTAGCTTTCGAGGTGAGGATACCCGCAGAAACTTCACGAGCCATCTTTATGATGCTCTGAGCCGAAAGAAAATTGAAACCTTTATAGACAATGAGCTTAAAAAAGGAGATGAGATCTCACCAACACTCATCAAAGTCATTGAGGAGTCACATGCATCTATTATCATCTTCTCAGAAAACTATGCTTCCTCAAAATGGTGCTTGAATGAGCTCAAAAAGATTCTAGAATGCAAGAAATATATGGAACAGATTGTGATACCTGTTTTTTACAACATTGATCCATCACATGTGAGGAAGCAGACCGGGAGTTACAAGCAAGCCTTTGTAAAGCATAAGCGGGATTTGAAGCACAATAATGACGAGTTGCAGAAATGGAAAGCTGCTCTCACTGAGGCAGCTAATTTAGTTGGTTGGGATTCTCGAAATTATGGGACTGAATCTGACTTCATTAAGGACATTGTTGAAGATGTTTTGCGGAAACTGAATCTTCGATACCCATATGAAATTAAGGGGCTTGTTGGAATTGAGAACAATTTTGAACAAATTGAATCAATGTTGAAAATTGGGTCAAATGAAGTTAGAGTCCTAGGAATATGGGGCATGGGCAGCATAGGAAAGACCACCCTTGCTAACGCTTTATATGCTAAACTGTATTCCCAATTTGAAGGTTGTTACTTCCTCAATGTAATGGATGAACCAAAGAAGTATGGACGTAATGTTGTACACAATAATTTTTTCTCTACATTGTTAGAGGAAGAAAATCTTCATCCTGATGCACACTACATAGTAGCCCCTTTCTCCGTTACAAGGGTTGCGCGTAAAAAAGTTTTCATTGTGTTGGATGGCGTGGAAACCTTAGAGCAAATAGAAGACCTTATCTTAAAAATTGATGGGCTGGGACTGGGTAGTAGGGTCATTATTACAACTAGAGATAAGCACATATTTAGTCAGTTCAGTAAATGTGAAATATATGAGGTCAAGGAATTGAACAAACACGATTCTCTTCAGCTATTCAGTTTGAATGCCTTTGGAGATAAACATCCTAAAATTGGATTTGAAGATCTATCAGAAAGTGTAATCGCCTATTGCAGAGGCAATCCTTTGGCTTTAAAAGTTTTAGGTGCAAATCTCCGTTCAAGACGCAAAGAAGCATGGGAAGATGAATTGAAAAAGCTCAAAAAGATTCCAAATGGCAAAGTTATTAATGTGTTAAAATCGAGTTATGAGGACTTAGATTGTTTTCAAAAGGCCATATTTCTAGATATTGCATGCTTGTTGAGAGGAGTGAATAAAATATTTGTAATAGATTTGTTGGAAGCTTGTGAGTTCTTTGCAAAAAGTGGGATAGAAGTCCTTCTAGATAAGGCTCTCATACAAATAAAACCAAATTGGCACTCGTGGTACCGATCAGAAGTTGATGCTTTAGAAATGCATGATTTGTTACAAAAAATGGGACAGGAGATTGTTAATCAAGAATCTAAAGACCCTGGAAAACGAAGTCGGTTGTGGAAAGCTAAAGAAATATCTGATATATTAAAAGAAAACAAGGGAACTGATGTTGTGGAAGGGATAACATTCCATAGTACGGAAGTTGAGGATCTATACTTGAAGTCTGATTCCTTTAGAAGGATGACAAACTTAAGATATCTTAATATCTATAATATATCTAACGGGAGCATATGCAATGTACACTTCCCTGACGGTCTCGAGCAACTTTCTGATAAATTGAGGTACCTTCGATGGGACGGATACTGTCTTGAGTCTTTGCCATCAACTTTTCGGGCTGAAATGCTCTTAGAGCTTCACTTGAGTCATAGCAAGCTTAAAAAGCTCTGGGATGGAGTTCAGAATCTTGTGAATCTAAACATACTTTGGCTTGAATCCTCCAAAGATCTGATTGAAATACCAGACTTATCTAGGGCTACAAATCTTCAAAGAGTATATCTCTATCAATGTGAAAGCCTGCGTCAGCTCCATCCATCCATCTTTTCTCTCCCTAAACTTACATATGTAGATTTAACAGATTGCAAAAAGATGGAAAGCTTTAAAACCAACATTCATTCAAAATCTCTTCGTGAACTCTTACTAGATGGTTGTTCATCTCTCACTGAATTTTCGGTGACATCGGAGGAAATGACAGAGTTATCCTTATGTGGCACTGCTATACGTGAATTGTCTTCATCAATTTGGTGTAATAGCAAACTTACTTCTCTTAACCTAACTGAGTGTAACAAGCTTAACATTGTTGGGATTAAGTTATCAAATGATCATGGACTGGGGTCTGTTACAAAACTAGACCTTTCTGGGTGCACTGAAATCAATACATTGAGTCTGTGGTTCATCCTTGATGGCATACGGTCGTTAAAACAGCTAAGGTTGAACAAGTGTTGCAATTTAGAAGGTCTTCCTGAGAACATACAAAACCATTCAATGCTAAAATGGCTTGATTTAGATGATTGTAGGAAACTTGCATCTCTAACAGAGCTTCCGCCATCCCTGCTATATTTGAAAGCTGTTAATTGCATTTATCTGGACACAGACTCCACTCAACGGTCATTGCTTGAGAACATGGTACAAACCTTCTCGAAAGACAATTATAATTTCTCTTTCTTACCAGGAGCACAAGTTCCATGCAAGTTTGATTTGCAGACAATAAAGGCATCAATAACTATTCCTCCTATTCCAAAATCTGGCTTGTATGGTTTCATATTTTGCATCATTCTTTCTAAGGGCCTCAATGTTTACGACCATTCCCTTCATTGTATCATCTTTGAACATGAAAAAGTAGTCAACAGATTTATTATTTCTCTCAATTATCATGGAACACTAATTTCAGATCATGTATTTATATGTTGGGATGGTTACAGCAAACAAGAAAGTGGAAGTATTGATTGCAACTTATCATTTCAATTCATACTTCAAGATCCCGAAGAACTGCGGTGGTCAACAGAGGGGATAAAGGGGTGTGGGGTCTTACCTGTATATGCCTTGGAACGTGAGTTGGAGGGTGATGGTAACATTATCATTAGTAAGGAAATTGGAAAATTAAAATCCATTGCTCAAGACTTTGAGGAGTTTGATTGTCTTTTGGAAAATGATATTGATGAAAGTCAAAAGCTCTAA	3189	0.3735	MSNAFSSTSSSYVVPRKKYDVFLSFRGEDTRRNFTSHLYDALSRKKIETFIDNELKKGDEISPTLIKVIEESHASIIIFSENYASSKWCLNELKKILECKKYMEQIVIPVFYNIDPSHVRKQTGSYKQAFVKHKRDLKHNNDELQKWKAALTEAANLVGWDSRNYGTESDFIKDIVEDVLRKLNLRYPYEIKGLVGIENNFEQIESMLKIGSNEVRVLGIWGMGSIGKTTLANALYAKLYSQFEGCYFLNVMDEPKKYGRNVVHNNFFSTLLEEENLHPDAHYIVAPFSVTRVARKKVFIVLDGVETLEQIEDLILKIDGLGLGSRVIITTRDKHIFSQFSKCEIYEVKELNKHDSLQLFSLNAFGDKHPKIGFEDLSESVIAYCRGNPLALKVLGANLRSRRKEAWEDELKKLKKIPNGKVINVLKSSYEDLDCFQKAIFLDIACLLRGVNKIFVIDLLEACEFFAKSGIEVLLDKALIQIKPNWHSWYRSEVDALEMHDLLQKMGQEIVNQESKDPGKRSRLWKAKEISDILKENKGTDVVEGITFHSTEVEDLYLKSDSFRRMTNLRYLNIYNISNGSICNVHFPDGLEQLSDKLRYLRWDGYCLESLPSTFRAEMLLELHLSHSKLKKLWDGVQNLVNLNILWLESSKDLIEIPDLSRATNLQRVYLYQCESLRQLHPSIFSLPKLTYVDLTDCKKMESFKTNIHSKSLRELLLDGCSSLTEFSVTSEEMTELSLCGTAIRELSSSIWCNSKLTSLNLTECNKLNIVGIKLSNDHGLGSVTKLDLSGCTEINTLSLWFILDGIRSLKQLRLNKCCNLEGLPENIQNHSMLKWLDLDDCRKLASLTELPPSLLYLKAVNCIYLDTDSTQRSLLENMVQTFSKDNYNFSFLPGAQVPCKFDLQTIKASITIPPIPKSGLYGFIFCIILSKGLNVYDHSLHCIIFEHEKVVNRFIISLNYHGTLISDHVFICWDGYSKQESGSIDCNLSFQFILQDPEELRWSTEGIKGCGVLPVYALERELEGDGNIIISKEIGKLKSIAQDFEEFDCLLENDIDESQKL*	1063

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g3498	1062	Pfam	Leucine Rich Repeat	620	638	IPR011713	-
	Mal2g3498	1062	Pfam	NB-ARC domain	199	431	IPR002182	GO:0043531
	Mal2g3498	1062	Gene3D	-	16	183	IPR035897	-
	Mal2g3498	1062	SUPERFAMILY	L domain-like	499	867	-	-
	Mal2g3498	1062	Gene3D	-	184	346	IPR027417	-
	Mal2g3498	1062	SMART	till_3	18	157	IPR000157	GO:0007165
	Mal2g3498	1062	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	444	IPR027417	-
	Mal2g3498	1062	Gene3D	-	350	434	IPR042197	-
	Mal2g3498	1062	Gene3D	Ribonuclease Inhibitor	533	710	IPR032675	-
	Mal2g3498	1062	Gene3D	Ribonuclease Inhibitor	711	875	IPR032675	-
	Mal2g3498	1062	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	160	IPR035897	-
	Mal2g3498	1062	PRINTS	Disease resistance protein signature	217	232	-	-
	Mal2g3498	1062	PRINTS	Disease resistance protein signature	292	306	-	-
	Mal2g3498	1062	PRINTS	Disease resistance protein signature	385	399	-	-
	Mal2g3498	1062	PRINTS	Disease resistance protein signature	685	701	-	-
	Mal2g3498	1062	ProSiteProfiles	TIR domain profile.	17	183	IPR000157	GO:0007165
	Mal2g3498	1062	Pfam	TIR domain	18	189	IPR000157	GO:0007165
	Mal2g3498	1062	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	1032	IPR044974	GO:0006952
	Mal2g3498	1062	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	1032	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g3498	Mal-Chr2	53513146	53517176	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal2g3498	2	862	WRKY Transcription Factor Family	AT4G12020	31.507	3.37e-96	334

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g3498	-		-	mtr:MTR_3g058740	1444.1