LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g3497	ATGAGCAGTGCTTTTTCCTCTATATCTTCTTCTTATGTGGTGCCTCCGAAAAAATATGACGTTTTTCTTAGCTTTCGAGGTGAGGATACCCGCAGAAACTTCACGAGCCATCTTTATGATGCTCTGAGCCGAAAGAAAGTTGAAACCTTTATAGACAACGATGATCTTGAAAAAGGAGATGAGATATCACCAGCACTCATCAAAGCCATTGAGGAGTCACATGCATCTATTGTCATCTTCTCAGAAAACTATGCTTCCTCAAAATGGTGCTTGAATGAGCTCAAAAAGATTCTAGAATGCAAGCAATATATGGAACAGATTGTGATACCTGTTTTTTACAACATTGATCCATCACATGTGCGGAAGCAGACCGGGAGTTACAAGCGAGCCTTTGCAAAACATAAGCGAGATTTGAAGCACAATAATGATGAGTTGCAGAAATGGAAAGCTGCTCTCAATGAGGCAGCTAGTTTGGTTGGTTGGGACTCTCAAAATTATAGGACTGAATCAGACTTCATTAAGGAAATTGTCGAAGATGTTTTGCAGAAACTGAACTTTAGATGCCAATATGAAATTAAGGGGCTTGTTGGAATTGAGAAGAGTTATAAACAAATTGAATCAATACTGAATATTGAGTCAAATGAAGTTAGAGTCCTTGGAATATGGGGCATGGGTGGCATAGGAAAGACAACCCTTGCTAAGGCTTTATCTAACAAACTGTATTCCCAATTCGAAGGCCATTGCTTCCTTAATGTAATGGATGAATCAAACAAGTATGGACGTACTGTTGTACACAATAATTTTTTCTCTACATTGTTAGAGGAAGAAAATCTTCATCCTGATGCACCCAACATAGAAACCCCTTTCTCCGTGACAAGGATTGCACGTAAAAAAGTTTTCATTGTGTTGGATGGCGTGGAAACCTTAGAGCAAATAGATGATCTTATCCCAAAAATTGATGGGCTGGGACCGGGTAGTAGGGTCATTATTACAACTAGAGATAAACACATATTTAGTCAGTTCAGTAAATGTGAAATATATGAGGTTAAAGAATTGAACAAACATGATTCTCTTCAGCTATTCAGTTTCACTGCCTTCGGAGAAAAACATCCTAAAATTGGATATGAAGATCTATCAGAAAGTGTAATTACCTATTGCCAAGGCAATCCTCTTGCTTTAAAAGTTTTAGGTGCTAATCTGAGTTCAAGAGGCAAAGAAGAATGGGAAAATGAATTGAAAAAGCTCCAAAAGATTCCCAATATGAAAGTATATAATGTGTTAAAATTGAGTTATGATGACTTAGATTGTTGTCAAAAGGCCATATTTCTAGACATCGCATGCTTGCTGAGAGAAGAGAGTAAATATTTCATAACAGATCTTTTGGAAGCTTGTGAGTTCTTTGCAATAAGTGGGATAGAGGTCCTTCTAGATAAATCTCTCATACAACTAAAACTAATTTGGCTTGACAAGTCGGAAGTTGATGGTATAGAAATGCATGATTTGTTAAAAGAAATGGGACGGGAGATTGTTAATCAAGAATCTAAAAACCCCGGAAAACGAAGTCGATTGTGGAAAGCTGAAGAAATCTCTGATGTATTGAAAAAAAACAAGGGAACTGAAGTTGTGGAAGGTATAATATTTGATAGTACGGAAGTTGGAAATCTTTACTTAAAATCTGATTGCTTTAGAAGCATGACAAACTTAAGATATCTTAAAATCTATAATGTATCTGTGGGGAGCACATGCAATGTGTACTTTCCCGACGGTCTTGAGTGGCTTTCTGATAAATTGAGGTTCCTTCGGTGGGATGGATACTGCCTTGAGTCTTTGCCATCAACCTTTTGTGCTGAAATGCTTATAGAGCTTCAAATGAATCATAGCAAGCTTAAAAAGCTCTGGGATGGAGTTCAGAATCTTGTGAATCTAAACATACTTTGGCTTGAATCCTCCAAAGATCTGATTGAGATCCCGGACTTATCTAGGGCTACAAATCTTAAAAAAGTATATCTCTTTGAATGTGAAAGCCTGTGTCAGCTCCATCCATCCATCTTTTCTCTCCCTCAGCTTACATATCTAGGTTTAGAAGGTTGTAAAAAGATTGAAAGCCTTAAAACCAACATTCATTCAAAATCTCTCCGTGAACTCTTACTCGATGGTTGTTCATCCCTCATAGAATTTTCGGTGACATCAGAAGAAATGACACGGTTGACCTTACGTGGCACTGCTATACGTGAATTATCTTCATCGATTTGGCGTAATTGCAAACTTACTTCTCTTGACCTAACTGAGTGTAACAAGCTCAACATTGTTGGGAAAAAGTTATCAAATGATCATGGACTTGGGTTTGTTACAGAACTAGACCTTTCTGGTTGCACAGAAATCAATGCATTGAGTCTTTGGTTTATCCTTGATGGCATACAGTCTTTAATACGGCTAAAATTGAAAGAGTGTTGCAACTTAGAAAGTCTCTCTGAGAACATACAAAACCATTCAATGCTAAAATGGCTTGATTTAGATGATTGCAGGAAACTTGTGTCTCTAGCAGAGCTTCCGCCATCCCTGTTATATTTGAAAGCCGTTAACTGCAATTATCTGGACACAGACTCCACTCAACGGTTATTGCTTGAGAACTTGGTACAAACATTCTCTAACGACTTTCCCAATGAAGATGAAATTGTTGGTGATTTCTCTTTCTTGCCAGGTGCACAAGTTCCATGCATGTTTGATTTTCGGACAATAGAGGCTTCAATAACTATTTCTCCTATTCCAAAATCTGGCTTGTGTGGTTTCATATTCTGCATCATTCTTTATGAGGGCTTCCATGTTTACGATCATTCCCTTCATTGTATCATCTTTGAACACGGCAAAGAAGTTGACAGACGTCGTATTGGTCTCAATTATATTGGGACATTAATTTCAGATCATGTATTGATATGTTGGCATGGTTACAACAGACAAGAAATTGGAAGTTATGACCGCAAGTTATCATTTCAATTCATACTTCAAGGTCCAGATGAACAATATTGGTGGTCAACAGAGGGGATAAAGGGGTGTGGGGTGTTACCTGTATATGCCTTAGAACGTGAGCTGGAGGGTGACTGTAGTAGTATCATTAGTAAAGAAATTGGTAAATTAAAATCCAATGCTCGAGACTTTGGTGAGTGTGACTGGATTTTGGAAAGTGATATTGATGTCACAAGCTCTAATAATGAAAATGAAGATGACCACGAACAACCTTCGTATTCTCGCAAAGAAGAGGGACAACTTTGTTGTTCAATCGGTCTCTTGTTGAGGCACTTGTTAAGAGGGTTAATTGAATAA	3321	0.3782	MSSAFSSISSSYVVPPKKYDVFLSFRGEDTRRNFTSHLYDALSRKKVETFIDNDDLEKGDEISPALIKAIEESHASIVIFSENYASSKWCLNELKKILECKQYMEQIVIPVFYNIDPSHVRKQTGSYKRAFAKHKRDLKHNNDELQKWKAALNEAASLVGWDSQNYRTESDFIKEIVEDVLQKLNFRCQYEIKGLVGIEKSYKQIESILNIESNEVRVLGIWGMGGIGKTTLAKALSNKLYSQFEGHCFLNVMDESNKYGRTVVHNNFFSTLLEEENLHPDAPNIETPFSVTRIARKKVFIVLDGVETLEQIDDLIPKIDGLGPGSRVIITTRDKHIFSQFSKCEIYEVKELNKHDSLQLFSFTAFGEKHPKIGYEDLSESVITYCQGNPLALKVLGANLSSRGKEEWENELKKLQKIPNMKVYNVLKLSYDDLDCCQKAIFLDIACLLREESKYFITDLLEACEFFAISGIEVLLDKSLIQLKLIWLDKSEVDGIEMHDLLKEMGREIVNQESKNPGKRSRLWKAEEISDVLKKNKGTEVVEGIIFDSTEVGNLYLKSDCFRSMTNLRYLKIYNVSVGSTCNVYFPDGLEWLSDKLRFLRWDGYCLESLPSTFCAEMLIELQMNHSKLKKLWDGVQNLVNLNILWLESSKDLIEIPDLSRATNLKKVYLFECESLCQLHPSIFSLPQLTYLGLEGCKKIESLKTNIHSKSLRELLLDGCSSLIEFSVTSEEMTRLTLRGTAIRELSSSIWRNCKLTSLDLTECNKLNIVGKKLSNDHGLGFVTELDLSGCTEINALSLWFILDGIQSLIRLKLKECCNLESLSENIQNHSMLKWLDLDDCRKLVSLAELPPSLLYLKAVNCNYLDTDSTQRLLLENLVQTFSNDFPNEDEIVGDFSFLPGAQVPCMFDFRTIEASITISPIPKSGLCGFIFCIILYEGFHVYDHSLHCIIFEHGKEVDRRRIGLNYIGTLISDHVLICWHGYNRQEIGSYDRKLSFQFILQGPDEQYWWSTEGIKGCGVLPVYALERELEGDCSSIISKEIGKLKSNARDFGECDWILESDIDVTSSNNENEDDHEQPSYSRKEEGQLCCSIGLLLRHLLRGLIE*	1107

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g3497	1106	Gene3D	-	186	347	IPR027417	-
	Mal2g3497	1106	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	185	445	IPR027417	-
	Mal2g3497	1106	Pfam	Leucine Rich Repeat	619	637	IPR011713	-
	Mal2g3497	1106	Pfam	TIR domain	18	185	IPR000157	GO:0007165
	Mal2g3497	1106	Gene3D	Ribonuclease Inhibitor	545	707	IPR032675	-
	Mal2g3497	1106	Gene3D	Ribonuclease Inhibitor	708	872	IPR032675	-
	Mal2g3497	1106	SMART	till_3	18	158	IPR000157	GO:0007165
	Mal2g3497	1106	SUPERFAMILY	L domain-like	498	869	-	-
	Mal2g3497	1106	Gene3D	-	16	185	IPR035897	-
	Mal2g3497	1106	Gene3D	-	351	435	IPR042197	-
	Mal2g3497	1106	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	1054	-	-
	Mal2g3497	1106	Pfam	NB-ARC domain	203	429	IPR002182	GO:0043531
	Mal2g3497	1106	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	161	IPR035897	-
	Mal2g3497	1106	ProSiteProfiles	TIR domain profile.	17	184	IPR000157	GO:0007165
	Mal2g3497	1106	PRINTS	Disease resistance protein signature	386	400	-	-
	Mal2g3497	1106	PRINTS	Disease resistance protein signature	828	844	-	-
	Mal2g3497	1106	PRINTS	Disease resistance protein signature	218	233	-	-
	Mal2g3497	1106	PRINTS	Disease resistance protein signature	293	307	-	-
	Mal2g3497	1106	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	1054	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g3497	Mal-Chr2	53439992	53444877	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal2g3497	17	861	WRKY Transcription Factor Family	AT4G12020	32.404	1.80e-102	354

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g3497	-		-	mtr:MTR_3g058670	1504.96