Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3475 ATGACTAGGAGAACCAAGTTTATGATGCGTCAGAAGAATAGGCAGTTTAAATCCTTGAAGCAAAGCTCTCGCAATCCTAGAAACAAGGATTCCTCTAAGTGTGATTCAACACTGAGTGCTGGTCATGATATCTCTCGCAATCCTACATTGTTACGTAGATGTCAACATTGTGTAGTCAATGAAAATAATACTCCTCTAATGCGCCATGGGCCAGCTGGACCAAAAACATTATGCAATGCACGCGGCATCATTGGGGCCAAAAAGAGGAAACTTAGAGATCTCAGTAAGGGACGAAGATATCTTTCTGTTGAGCAAAGTGATCTGGATCCTCTTATTGATGTCAATATTACTGTTCTTGAAGGAGTATTTCCTGTCATCCAAAACGAACAAGGTATTTCTGAAGATCCTTCCAAAGCAATCACTGGTAGTAAAGGTTCAAATAATCATGTATTAAACCCCTATGACGAGGGTATTTCAGAAGATCCTTACAAATCCATCGCTGGTCAAGGTTCATATAGCCATGCATTAAACACCTGTGGTGAGGATCTTCTTACTGATGTCAATATTACTGTTCTTGAAGGAGTAATGCCTGTCATCCAAAATGAACAAGGTATTTCTGAAGGTCCTTTCAAAGCTATAGCTAGTGAAGGTTCAAATAATCATGCATTAAACCCCTGTGACGAGGATCCTCTATATGATGTCAATATTACCGTTCTTGAACAAGAATTGTCCGCCATCCAAAATGAACAGGGTATTTCAGAAGATCATTCCAAATCCATCGCTGGTGAAGGTTCATATAACCATGCATTAAACACCTGCGGCGAGGACCCTCTTATTGATGTCAATATTAACGTTCTTGAAGGAGAATTTTCTGTCATCCAAAATGACCAAGGTATTTCTGAGTGTCCTTCCAAAGTCATCGTCGCTGGTGAAGGATTGAATAATCATTCATTAAACCACTGTGACGAGGATTCTCTATTTGATGTCAATATTACTGTTCTTGAAGGAGAATTGCATGCCATCCAGAATGAACAGGGTATTTCTGAAGTTCCTTCCAAAGCCATCGCTGGTGAAGGTTCAAATAATCATGCATTAAACCCCTATGATGAGCTGATGAAGAGCTATACATTTTCAGAGATTATGGCAACGACAGAGTCGTTGTTGGCATTTCTCAAAAAGGACTTGCCGTCTTCCTCGGAGGTAGACTACACCTCGGGTCGAGCGAAGTATAGAAGGATTGTGGTCGAGACTACAACGGTGGCAGGGCAGACTGTCCGCAATGACATCACCAGGAGGATGATGGATTTTCCTGTGCCTTTGCGGCAGATTATAGAGGCATGGTTGGATGTTTTGGCGAGCGAGGTAGAGACACCTTCTGAGGACTCGTCTGAGAGACCACTCCACACTACTTTTTTCGAACCTCCGAAGAGTAGGGAGACGTTTGTTCATCCTGCCACTCTTAGAAGTGTTGTAGCTGCTGCTGGGGATGAGATTGGGACATCCACCTCTACGGTGGTTCAGGAGCAACCAGTGGGTGAAGAGGTTCCTGTTGTTGTGCCTGAGCCTGTTGCTTCTCCTCATAGCAGTCACCTGATTCAGTCATAG 1605 0.4305 MTRRTKFMMRQKNRQFKSLKQSSRNPRNKDSSKCDSTLSAGHDISRNPTLLRRCQHCVVNENNTPLMRHGPAGPKTLCNARGIIGAKKRKLRDLSKGRRYLSVEQSDLDPLIDVNITVLEGVFPVIQNEQGISEDPSKAITGSKGSNNHVLNPYDEGISEDPYKSIAGQGSYSHALNTCGEDLLTDVNITVLEGVMPVIQNEQGISEGPFKAIASEGSNNHALNPCDEDPLYDVNITVLEQELSAIQNEQGISEDHSKSIAGEGSYNHALNTCGEDPLIDVNINVLEGEFSVIQNDQGISECPSKVIVAGEGLNNHSLNHCDEDSLFDVNITVLEGELHAIQNEQGISEVPSKAIAGEGSNNHALNPYDELMKSYTFSEIMATTESLLAFLKKDLPSSSEVDYTSGRAKYRRIVVETTTVAGQTVRNDITRRMMDFPVPLRQIIEAWLDVLASEVETPSEDSSERPLHTTFFEPPKSRETFVHPATLRSVVAAAGDEIGTSTSTVVQEQPVGEEVPVVVPEPVASPHSSHLIQS* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3475 534 MobiDBLite consensus disorder prediction 134 156 - -
Mal2g3475 534 Pfam GATA zinc finger 54 89 IPR000679 GO:0006355|GO:0043565
Mal2g3475 534 PANTHER GATA TRANSCRIPTION FACTOR 25 9 99 - -
Mal2g3475 534 PANTHER GATA TRANSCRIPTION FACTOR 28 9 99 IPR045280 GO:0006355
Mal2g3475 534 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 49 101 - -
Mal2g3475 534 Gene3D - 50 104 IPR013088 GO:0006355|GO:0008270
Mal2g3475 534 MobiDBLite consensus disorder prediction 1 42 - -
Mal2g3475 534 MobiDBLite consensus disorder prediction 134 153 - -
Mal2g3475 534 CDD ZnF_GATA 53 98 IPR000679 GO:0006355|GO:0043565
Mal2g3475 534 PANTHER GATA TRANSCRIPTION FACTOR 25 223 534 - -
Mal2g3475 534 SMART GATA_3 48 106 IPR000679 GO:0006355|GO:0043565
Mal2g3475 534 PANTHER GATA TRANSCRIPTION FACTOR 28 223 534 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3475 Mal-Chr2 52799587 52818011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3475 6 96 Tify Gene Family AT1G51600 37.168 1.95e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal2g3475 GATA 1.2e-07 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3475 - - mtr:MTR_3g060200 636.721