Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3461 ATGGTTTCATTTTCTACAAATTATGCAATAGGAGAAAATAGCATGGCTAGTAGTGTCCAAACCATGCCTCAACCAACTACCTTATCTCAAATTCAACCTTCATATTTGACTAGAATTGCCATGAGAATATCAAGATCAAGATGGTTCACTTTTTTGAAAAGAGTGTTTCATTACCAAAATGGACCAAGATCTGATCTTGGTTCAAACCCTTTTAATTCTAGTACTTGGATGATGTTGGAATTGATTGCTTTGTTGGTTCAGATAACAAGCACAACATTCACTTTGGCAATTTCAAAGAGTGAGAAACCTGTTTGGCCTATGAGGGTGTGGATAGTTGGTTATGATATTGGATGTGTTCTTAATTTGTTGTTACTTTGTGGCCGCTATTATCAAATTAATGTTACTCAAGGTGATGCTCTTGGTTTTTCTGATATGGAACAGCAAACAAACAATGAAGAAAATAGTGTATATAGGAGCACACATTTGATGAGAAAATGCAGAAGTTCACTAGAGCTATTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGTCCTTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAATTCTCTGCATTATCCTTCTTGTTTGGAATGCAATTTGTTACTCTTTCCCTTTTCTACTATTTTTGTTGCTTTGTTGTGTTGTGCCACTCATTAGCACACTCCTTGGTTACAACATGAACATAGGATCATCTTCTAAAGGTGCATCTGATGATCAAATTTCACAACTTCCATCTTGGAGATTTAAAGTGGCTCATACCAAATTAGATCTTAACAATGATTCCGAATGCAATGAAAGATTGATCCGCGAAGAGCCGGAATGTTGCATATGCTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTGCCATGTTCCCATATGTTCCATCTAAAATGTGTTGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGTAAACAAGGATTACAAAGGTAG 1002 0.3633 MVSFSTNYAIGENSMASSVQTMPQPTTLSQIQPSYLTRIAMRISRSRWFTFLKRVFHYQNGPRSDLGSNPFNSSTWMMLELIALLVQITSTTFTLAISKSEKPVWPMRVWIVGYDIGCVLNLLLLCGRYYQINVTQGDALGFSDMEQQTNNEENSVYRSTHLMRKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQILCIILLVWNAICYSFPFLLFLLLCCVVPLISTLLGYNMNIGSSSKGASDDQISQLPSWRFKVAHTKLDLNNDSECNERLIREEPECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQGLQR* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3461 333 CDD RING-H2_RNF111_like 285 328 - -
Mal2g3461 333 SUPERFAMILY RING/U-box 278 331 - -
Mal2g3461 333 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
Mal2g3461 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 332 IPR013083 -
Mal2g3461 333 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 332 - -
Mal2g3461 333 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 332 - -
Mal2g3461 333 SMART ring_2 287 327 IPR001841 -
Mal2g3461 333 Pfam RING-like zinc finger 286 314 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3461 Mal-Chr2 52594721 52598119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3461 35 331 C3H Transcription Factor Family AT4G26580 67.677 2.55e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3461 - - gmx:100818715 550.821