Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3428 ATGGCTAGGAGAAATGCTACCCTCCCCATCCGTTTCTTCAAGATTATTCTTCAAACTAATCTTCAAAGGATTAAAATGCCAAATAAGTTTACAAGGAGACATGGAGTTGGTCTATCAAATCCAGTGTTGATCAAGCCTCCTGATGGCACAAAATGGAAAGTTTATTGGAAAAAAATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAAATCTTTTACTGAAAATTACTCTCTAGGACATGGCTGTTTGATAATGTTCAAATATAAAGGAACTTCAAAGTTTGATGTACTCATACTTGGCCAGAATGCAGTAGAAATAGATTATGATCATTCATGTGACAATTATGATGAAAAAGAAAATGTTGGTCATAGTGATGATGAATCACTTGAGATTTTGAATGAATGGCCAAATCAGAAGACTAGAAAAAGGTCACCGTTAGTTTCTCCTCCACCACATAAGAAAGTTAGAGGTGAGATTAAGAAGACTAGTCAAAGAACTACATCATGGAATTGGCCAAAGGGAGCTAGAGCTCAGGAAGTAGCTTTAAAATTCATCTCAAGCAATCTTTTTTTCACAATTCTCATAAATCCTAATCATCTAGTAGAAAATCGGGTGTGTATACCGACTTTAAAGGGGGTTATTGAGAACAAAGAAAAGTATGTAATGCTGCAGATTGGGAAAAGATCATGGAATCTGAAATTGCTCCCTTGTTGCGAGGCTAGAAATGGTCGCCGCCTATCGGCCGGTTGGTCCTTGTTTGCAAGTGAAAGTGGACTGCAACCAGGAGATGTTTGTGTCTTTGAACTGATAAACAAGAAAGATTTGGTTTTTAATGTTCATGTTTTTAAAAGTGACAGTTAA 861 0.367 MARRNATLPIRFFKIILQTNLQRIKMPNKFTRRHGVGLSNPVLIKPPDGTKWKVYWKKINGEIWFEKGWKSFTENYSLGHGCLIMFKYKGTSKFDVLILGQNAVEIDYDHSCDNYDEKENVGHSDDESLEILNEWPNQKTRKRSPLVSPPPHKKVRGEIKKTSQRTTSWNWPKGARAQEVALKFISSNLFFTILINPNHLVENRVCIPTLKGVIENKEKYVMLQIGKRSWNLKLLPCCEARNGRRLSAGWSLFASESGLQPGDVCVFELINKKDLVFNVHVFKSDS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3428 286 Pfam B3 DNA binding domain 19 96 IPR003340 GO:0003677
Mal2g3428 286 Pfam B3 DNA binding domain 190 284 IPR003340 GO:0003677
Mal2g3428 286 CDD B3_DNA 11 99 IPR003340 GO:0003677
Mal2g3428 286 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 7 283 - -
Mal2g3428 286 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Mal2g3428 286 Gene3D - 7 103 IPR015300 -
Mal2g3428 286 CDD B3_DNA 189 283 IPR003340 GO:0003677
Mal2g3428 286 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mal2g3428 286 Gene3D - 172 285 IPR015300 -
Mal2g3428 286 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 7 283 IPR039218 -
Mal2g3428 286 SMART B3_2 12 102 IPR003340 GO:0003677
Mal2g3428 286 SMART B3_2 190 285 IPR003340 GO:0003677
Mal2g3428 286 SUPERFAMILY DNA-binding pseudobarrel domain 186 285 IPR015300 -
Mal2g3428 286 MobiDBLite consensus disorder prediction 139 161 - -
Mal2g3428 286 ProSiteProfiles B3 DNA-binding domain profile. 190 285 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3428 Mal-Chr2 51955418 51957876 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3428 8 283 B3 DNA Binding Superfamily AT3G18990 27.697 3.67e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal2g3428 B3 4.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3428 - - mtr:MTR_3g061330 370.548