Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3367 ATGACATCATATTCACGGAGATCAAGGTATTCCCCCTCTCCCTCGCCCTCACCCTCTCCATACAGGCGATACAGTAGGTCTGTGTCCCGGTCTCTTTCAAGGTCCAGATCCAGGAGCCGCTCAAGGAGCATATCACCAGATGTGGAAAATCCAGGAAACAATTTGTATGTGACAGGACTGTCTCCTAGGATCACCAAGAGGGAGCTGGAGAAGCATTTTTCTGCTGAGGGAAAAGTGGTAGATGTCCATCTGGTTGTTGATCCATGGACAAGGGAATCCCGTGGTTTTGGATTTGTGACAATGGATACTTTAGAAGAAGCTAACCGTTGTGTGAAGTATCTGGATCGCTCTGTACTTGAAGGTCGTGTTATCACGGTGGAGAAGGCTAGAAGGCGACGTGGTCGAACCCCAACACCTGGGAAATATCTAGGTCTCAGGACTACTCGAGGACGGCGTCGCTCTCCAAGCTACTCTCCTCGTCGCTCTCCTAGCTATTCTCCTTACAGAAGAAGCTACAGTCGTTCACCTTATTCTTCAGATCGTAGTAGGAGTCGCTCTTACTCGCCTAACTACAGGCGAAGGAGGTCTTACTCGCCTGACTACAGGCGAAGGAGGGCATACTCGCCATACTATAGCCGACGTAGGTCATATTATCGTTATGATCGACACATGTCATATTCTCGGTCTCGCTCTCCTTACAGCAGGTCTCCTGTCAGCGTGCGTGATAGATACTCTCCCTACGGCTCAAAATATGACTCACCTGATGATAGCCACTACAGAAGGTACAGGTCAGTTTCTCGAAGTGTCTCACCCATGCCAAGGAGGTCAAGGAAGAGATACTCACCAAGTGTCTCTCCTGTTAGAAGGAACTACTCCCGAAGTGCCTCCCCAAGGCCAAGGAGAAGGTCAGGAAGGAGTTATTCAAGAAACACTAGAAGGAGTGATGGTTGTTCCAAAGTCCAGCGTTCTCAATCAAGAAGCTCAAGTGTGAGTGCGAGTTCAAGATCGTTTTCAAGGTCCAACACTCCTGGGTCTACCTCTCCTTCAAATTGA 1053 0.491 MTSYSRRSRYSPSPSPSPSPYRRYSRSVSRSLSRSRSRSRSRSISPDVENPGNNLYVTGLSPRITKRELEKHFSAEGKVVDVHLVVDPWTRESRGFGFVTMDTLEEANRCVKYLDRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTTRGRRRSPSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPNYRRRRSYSPDYRRRRAYSPYYSRRRSYYRYDRHMSYSRSRSPYSRSPVSVRDRYSPYGSKYDSPDDSHYRRYRSVSRSVSPMPRRSRKRYSPSVSPVRRNYSRSASPRPRRRSGRSYSRNTRRSDGCSKVQRSQSRSSSVSASSRSFSRSNTPGSTSPSN* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3367 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 131 IPR000504 GO:0003723
Mal2g3367 350 MobiDBLite consensus disorder prediction 129 208 - -
Mal2g3367 350 MobiDBLite consensus disorder prediction 20 34 - -
Mal2g3367 350 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 12 268 - -
Mal2g3367 350 MobiDBLite consensus disorder prediction 310 350 - -
Mal2g3367 350 Gene3D - 3 137 IPR012677 -
Mal2g3367 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 124 IPR000504 GO:0003723
Mal2g3367 350 SMART rrm1_1 54 127 IPR000504 GO:0003723
Mal2g3367 350 MobiDBLite consensus disorder prediction 225 350 - -
Mal2g3367 350 MobiDBLite consensus disorder prediction 157 185 - -
Mal2g3367 350 MobiDBLite consensus disorder prediction 1 54 - -
Mal2g3367 350 SUPERFAMILY RNA-binding domain, RBD 41 156 IPR035979 GO:0003676
Mal2g3367 350 PANTHER TRANSFORMER-2-RELATED 12 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3367 Mal-Chr2 50716862 50719091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3367 54 135 Eukaryotic Initiation Factors Gene Family AT2G36660 35.366 1.79e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3367 - - mtr:MTR_3g462330 281.182