Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3362 ATGAAGTATTCACTCTCGAAAAAATATTCTGATGCAAAACACAAGGCAGCATGCAAAACTCTTTCAGAAAAAAGCTATGAAAACTACAAGAAGAAACAAGATTCTGATGCAAAGGAGAAGAAACCAAATATCATGAAGAGAAAATCTCAATCAGAAAGTTATGATGAAAAGAAGAAGAAGAATAAGAAGAAAAAGAAACAAGATTCTGATGCAAAGGAGAAGAAACCATTAATCCTTGATGATGAACTAGAAGAAAAATTTGGTCAATCCTCTAGAAGCTCATGTGGTATATGCTTTGATTTGAAAACAGATTCTGATATGTTCAAAAGAAAAAGTTGCAACCACCTCTTTTGTGTTGATTGTATTTCCAAATATGTGGATTCTCAAAGAAGCAATAATGTGGTTAAGGTGACTTGTCCAACTCCAAATTGTTTTGTGAAATTGTTGCCAAGACATTTGCAACATATTTTGCCTAAAGAATTTATCGATCGATGGGAATTGGCAAAGTATGAGTCTAAAATTGCATTAGAGCAAAAGACATATTGTCCATTTAAAGATTGTTCTGTTTTGTTGGTGAATGATAATGATAGGGGAGTGGTTTTGACTAGTTGCGAGTGTCCGTCTTGTCATCGACTATTTTGTGCTCAATGTAAGGTTCCATGGCATGCAGAGATGAATTGTCGGGAGTTTCAAGATATGAAACGCGATAAAAATGAAATAGATTTGGATTATAAGTTTTTGAAGTTGGCTAGAAGAAAGAAGTGGCAGAGATGTCCAAATTGCTCTATCTATGTCAAGAGAAATAAGGGATGTGAACACATGAAATGCAGGTGTAAATGCAACTTCTGCTACCATTGTGGGAAGAAATGGAAGAGTGGACATTTTTGCAAAAAAATGAAAAGAGTGAGGATTCGACTATTATAG 924 0.3452 MKYSLSKKYSDAKHKAACKTLSEKSYENYKKKQDSDAKEKKPNIMKRKSQSESYDEKKKKNKKKKKQDSDAKEKKPLILDDELEEKFGQSSRSSCGICFDLKTDSDMFKRKSCNHLFCVDCISKYVDSQRSNNVVKVTCPTPNCFVKLLPRHLQHILPKEFIDRWELAKYESKIALEQKTYCPFKDCSVLLVNDNDRGVVLTSCECPSCHRLFCAQCKVPWHAEMNCREFQDMKRDKNEIDLDYKFLKLARRKKWQRCPNCSIYVKRNKGCEHMKCRCKCNFCYHCGKKWKSGHFCKKMKRVRIRLL* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3362 307 Gene3D - 225 305 - -
Mal2g3362 307 ProSiteProfiles Zinc finger RING-type profile. 95 143 IPR001841 -
Mal2g3362 307 SUPERFAMILY RING/U-box 174 232 - -
Mal2g3362 307 MobiDBLite consensus disorder prediction 27 58 - -
Mal2g3362 307 MobiDBLite consensus disorder prediction 27 75 - -
Mal2g3362 307 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 46 297 IPR031127 GO:0004842|GO:0016567
Mal2g3362 307 SUPERFAMILY RING/U-box 245 298 - -
Mal2g3362 307 ProSiteProfiles TRIAD supradomain profile. 91 300 IPR044066 -
Mal2g3362 307 Pfam IBR domain, a half RING-finger domain 249 295 IPR002867 -
Mal2g3362 307 Pfam IBR domain, a half RING-finger domain 168 227 IPR002867 -
Mal2g3362 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 178 IPR013083 -
Mal2g3362 307 SMART ibrneu5 163 227 IPR002867 -
Mal2g3362 307 Pfam Zinc finger, C3HC4 type (RING finger) 95 140 IPR018957 GO:0046872
Mal2g3362 307 SMART ring_2 95 142 IPR001841 -
Mal2g3362 307 ProSitePatterns Zinc finger RING-type signature. 113 122 IPR017907 -
Mal2g3362 307 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 46 297 - -
Mal2g3362 307 SUPERFAMILY RING/U-box 91 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3362 Mal-Chr2 50658543 50659591 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3362 88 287 C3H Transcription Factor Family AT2G19610 29.524 2.99e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3362 K11975 - mtr:MTR_0777s0010 456.447