Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal2g3360 | ATGCAGTACTCCCATGTGGCCGCAATCACTAGTCGTCAACGTCAACCTCTTTCAGCAAAAGGATCTCAAAACACAATGAAGACAAATTCTGTTTCAGAAGACTGTGAAAACAAAACACAGACAGTTATCGAACAAGTATGTGGCATATGCTTTGATTCTGTAAAAGACTCTAATATGTTTTCAAACGGTTCATGCAACCATCCCTTTTGTACTAAATGCATATCTAAGTATGTGAATATTCACAGAAAAGAAAAAGGAGTGAAACTGGATTGTCCTGATCCAAAATGTTCTGTTGAACTGAAACCAGAACATTTGCAATCCATTTTACCTAAAAAAATCATTGTTGAATGGGAATCTGCAATCTATGAATCTTCTATTGCTACGATGCAAAAAATTTACTGCCCTTATAAGAATTGTTCTCTTTTGTGCACAAGTTGTGAATGTCCATCTTGTCATAGGCTATTCTGTGCACAATGTAAAGTTCCGTGGCACGCAAATATGAATTGTCACGAATTTCAGAATTCGGATATAGGTCAAGGTGAAAAACAGTTGGTTAGGAATTTTTTGGAGTTGGCTGAAAGAGAAAAGTGGCAGAGATGTCCAAAATGCTCTATGCATGTACAGAGAACTCATGGATGTGTGGTTGTCACTTCTGCTACATGTGTGGTAGGGATTGGAATTGGTTTCATACTTGCGATCAACATTTAG | 708 | 0.3743 | MQYSHVAAITSRQRQPLSAKGSQNTMKTNSVSEDCENKTQTVIEQVCGICFDSVKDSNMFSNGSCNHPFCTKCISKYVNIHRKEKGVKLDCPDPKCSVELKPEHLQSILPKKIIVEWESAIYESSIATMQKIYCPYKNCSLLCTSCECPSCHRLFCAQCKVPWHANMNCHEFQNSDIGQGEKQLVRNFLELAEREKWQRCPKCSMHVQRTHGCVVVTSATCVVGIGIGFILAINI* | 236 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal2g3360 | 235 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 25 | 221 | IPR031127 | GO:0004842|GO:0016567 | |
| Mal2g3360 | 235 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Mal2g3360 | 235 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 25 | 221 | - | - | |
| Mal2g3360 | 235 | SMART | ibrneu5 | 115 | 169 | IPR002867 | - | |
| Mal2g3360 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 128 | IPR013083 | - | |
| Mal2g3360 | 235 | SUPERFAMILY | RING/U-box | 46 | 129 | - | - | |
| Mal2g3360 | 235 | ProSitePatterns | Zinc finger RING-type signature. | 65 | 74 | IPR017907 | - | |
| Mal2g3360 | 235 | Pfam | Zinc finger, C3HC4 type (RING finger) | 47 | 92 | IPR018957 | GO:0046872 | |
| Mal2g3360 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 47 | 95 | IPR001841 | - | |
| Mal2g3360 | 235 | ProSiteProfiles | TRIAD supradomain profile. | 43 | 235 | IPR044066 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal2g3360 | Mal-Chr2 | 50574636 | 50575491 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal2g3360 | 35 | 221 | C3H Transcription Factor Family | AT2G19610 | 25.366 | 1.18e-16 | 76.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal2g3360 | K11975 | - | mtr:MTR_3g462570 | 294.664 |