Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mal2g3359 | ATGATGAAAATCGAATACACTCCTCCCATGTCTCCTCAAAAAGCAATCACCCCTCGTTCTCAAGGTCAATCCTCAAAAAGCTTATGCGGTATATGTCTTGATTCTGTCATAGACTCTAAAACTTTCACAAATGGTTCATGCAATCACCCCTTTTGTATTAAATGCATATCCAAGTATGTGAAAGTTCAAAGAAAAGAAAAAGTGGTGAAAGTGAATTGTCCGGATCCAGAATGTTCTGATGAACTGAAACCAGAACACTTGCAATCCATTTTACCTAACAAAGACATTGTTGATTGGGAATCTGCTATTTATGAGTCTTCTATTGTTTCGAGGCAAAAAATATACTGCCCTTATAAGAATTGTTCTCTTTTGTTGGTGAAGGACGGGCTAGAGGTTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGGCTATTCTGTGCACAATGTGAAGTTCCATGGCATGCAGATATGAAATGCCGTCAATTTCAGAAGTCGAAAAAGGTTCTAGGTGAAAAGCAACTTGATAAGAAATTAGTGCAGTTGGCTAAAAGTGAAATGTGGCAGAGATGTCCAAAATGTTCTATGCATGTTGAGAAAACACTGGGATGTGTGGATGTAATTTCTGCTACAATTGTGGTAAGAAATTCAAGAAAGGAAACTTTGAACATAAATGCAAGATATCACGCCAAAAACAGAGTATACACATTGCTTGTAAAGGATGGCGGAGATGCTTTTGGAGAAAGTCATTTTGTGAAGATTGACTGCATGGGATTACAAAAAATTAGATGCCAAACTTAA | 798 | 0.3722 | MMKIEYTPPMSPQKAITPRSQGQSSKSLCGICLDSVIDSKTFTNGSCNHPFCIKCISKYVKVQRKEKVVKVNCPDPECSDELKPEHLQSILPNKDIVDWESAIYESSIVSRQKIYCPYKNCSLLLVKDGLEVVTSCECPSCHRLFCAQCEVPWHADMKCRQFQKSKKVLGEKQLDKKLVQLAKSEMWQRCPKCSMHVEKTLGCVDVISATIVVRNSRKETLNINARYHAKNRVYTLLVKDGGDAFGESHFVKIDCMGLQKIRCQT* | 266 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mal2g3359 | 265 | SMART | ibrneu5 | 97 | 159 | IPR002867 | - | |
Mal2g3359 | 265 | ProSiteProfiles | Zinc finger RING-type profile. | 29 | 74 | IPR001841 | - | |
Mal2g3359 | 265 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 111 | IPR013083 | - | |
Mal2g3359 | 265 | ProSiteProfiles | TRIAD supradomain profile. | 25 | 252 | IPR044066 | - | |
Mal2g3359 | 265 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 16 | 206 | - | - | |
Mal2g3359 | 265 | SUPERFAMILY | RING/U-box | 110 | 165 | - | - | |
Mal2g3359 | 265 | Pfam | Zinc finger, C3HC4 type (RING finger) | 29 | 74 | IPR018957 | GO:0046872 | |
Mal2g3359 | 265 | SUPERFAMILY | RING/U-box | 25 | 106 | - | - | |
Mal2g3359 | 265 | Pfam | IBR domain, a half RING-finger domain | 108 | 159 | IPR002867 | - | |
Mal2g3359 | 265 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Mal2g3359 | 265 | ProSitePatterns | Zinc finger RING-type signature. | 47 | 56 | IPR017907 | - | |
Mal2g3359 | 265 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 16 | 206 | IPR031127 | GO:0004842|GO:0016567 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mal2g3359 | Mal-Chr2 | 50485455 | 50487706 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mal2g3359 | 21 | 203 | C3H Transcription Factor Family | AT2G19610 | 26.042 | 1.26e-16 | 77.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mal2g3359 | K11975 | - | mtr:MTR_3g462570 | 273.863 |