Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3359 ATGATGAAAATCGAATACACTCCTCCCATGTCTCCTCAAAAAGCAATCACCCCTCGTTCTCAAGGTCAATCCTCAAAAAGCTTATGCGGTATATGTCTTGATTCTGTCATAGACTCTAAAACTTTCACAAATGGTTCATGCAATCACCCCTTTTGTATTAAATGCATATCCAAGTATGTGAAAGTTCAAAGAAAAGAAAAAGTGGTGAAAGTGAATTGTCCGGATCCAGAATGTTCTGATGAACTGAAACCAGAACACTTGCAATCCATTTTACCTAACAAAGACATTGTTGATTGGGAATCTGCTATTTATGAGTCTTCTATTGTTTCGAGGCAAAAAATATACTGCCCTTATAAGAATTGTTCTCTTTTGTTGGTGAAGGACGGGCTAGAGGTTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGGCTATTCTGTGCACAATGTGAAGTTCCATGGCATGCAGATATGAAATGCCGTCAATTTCAGAAGTCGAAAAAGGTTCTAGGTGAAAAGCAACTTGATAAGAAATTAGTGCAGTTGGCTAAAAGTGAAATGTGGCAGAGATGTCCAAAATGTTCTATGCATGTTGAGAAAACACTGGGATGTGTGGATGTAATTTCTGCTACAATTGTGGTAAGAAATTCAAGAAAGGAAACTTTGAACATAAATGCAAGATATCACGCCAAAAACAGAGTATACACATTGCTTGTAAAGGATGGCGGAGATGCTTTTGGAGAAAGTCATTTTGTGAAGATTGACTGCATGGGATTACAAAAAATTAGATGCCAAACTTAA 798 0.3722 MMKIEYTPPMSPQKAITPRSQGQSSKSLCGICLDSVIDSKTFTNGSCNHPFCIKCISKYVKVQRKEKVVKVNCPDPECSDELKPEHLQSILPNKDIVDWESAIYESSIVSRQKIYCPYKNCSLLLVKDGLEVVTSCECPSCHRLFCAQCEVPWHADMKCRQFQKSKKVLGEKQLDKKLVQLAKSEMWQRCPKCSMHVEKTLGCVDVISATIVVRNSRKETLNINARYHAKNRVYTLLVKDGGDAFGESHFVKIDCMGLQKIRCQT* 266
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3359 265 SMART ibrneu5 97 159 IPR002867 -
Mal2g3359 265 ProSiteProfiles Zinc finger RING-type profile. 29 74 IPR001841 -
Mal2g3359 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 111 IPR013083 -
Mal2g3359 265 ProSiteProfiles TRIAD supradomain profile. 25 252 IPR044066 -
Mal2g3359 265 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 206 - -
Mal2g3359 265 SUPERFAMILY RING/U-box 110 165 - -
Mal2g3359 265 Pfam Zinc finger, C3HC4 type (RING finger) 29 74 IPR018957 GO:0046872
Mal2g3359 265 SUPERFAMILY RING/U-box 25 106 - -
Mal2g3359 265 Pfam IBR domain, a half RING-finger domain 108 159 IPR002867 -
Mal2g3359 265 MobiDBLite consensus disorder prediction 1 22 - -
Mal2g3359 265 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Mal2g3359 265 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 206 IPR031127 GO:0004842|GO:0016567
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal2g3359 Mal-Chr2 50485455 50487706 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3359 21 203 C3H Transcription Factor Family AT2G19610 26.042 1.26e-16 77.0
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3359 K11975 - mtr:MTR_3g462570 273.863