Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3357 ATGATGAAAATCGAATACACTCCTCCCATGTCTCCTTCTCATACTTTTCTTGCAGCAAATGGAAATCAGATTTCAATGAAGAGAAAATCTCTTTCAGAAGACCGCGATATTGAAAAGAAAAAGAAGACAAAGAAAACAATCACCCCTCGTTCTCAAGGTCAATCCTCAAAAAGCTTATGCGGTATATGTCTTGATTCTGTAATAGACTTTAAAATTTTCACAAACACTTCATGCAATCACCCCTTTTGTATTAAATGCATATCCAAGTATGTGAAAGTTCAAAGAAAAGAAAAAGTGGTGAAAGTGAATTGTCCGGATCCAGAATGCTCTGTTGAACTGAAACCAGAACATTTGCAATCCATTTTACCTAAAAAAGTCATTGTTGATTGGGAATCTGCAATTTATGAGTCTTCTATTGTTTCGAGGCAAAAAATATATTGCCCTTATAAGAATTGTTCTCTTCGGTTGGTGAATGATGGGCTAGAGGGTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGGCTATTCTGTGAACAATGTGAAGTTCCATGGCATGCAGATATGAAATGCCGTCAATTTCAGAAATCGAAAAAGGTTCTAGGTGAAAAACAACTTGATAAGAAATTAGTGCAGTTGGCTAGAAGTGAAATGTGGCAGAAATGTCCGAAATGTTCTATGCATGTTGAGAAAATAGAGGGATGTGATCGCATTATATGCAGTTGTGGATGTTCTTTCTGCTACAATTGTGGTAAGAAATTCAAGAAAGGAAACTTTGATCATACATGCAAGATATCACGGTAA 801 0.3608 MMKIEYTPPMSPSHTFLAANGNQISMKRKSLSEDRDIEKKKKTKKTITPRSQGQSSKSLCGICLDSVIDFKIFTNTSCNHPFCIKCISKYVKVQRKEKVVKVNCPDPECSVELKPEHLQSILPKKVIVDWESAIYESSIVSRQKIYCPYKNCSLRLVNDGLEGVTSCECPSCHRLFCEQCEVPWHADMKCRQFQKSKKVLGEKQLDKKLVQLARSEMWQKCPKCSMHVEKIEGCDRIICSCGCSFCYNCGKKFKKGNFDHTCKISR* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3357 266 ProSitePatterns Zinc finger RING-type signature. 78 87 IPR017907 -
Mal2g3357 266 SUPERFAMILY RING/U-box 141 196 - -
Mal2g3357 266 Pfam IBR domain, a half RING-finger domain 139 190 IPR002867 -
Mal2g3357 266 Pfam Zinc finger, C3HC4 type (RING finger) 60 105 IPR018957 GO:0046872
Mal2g3357 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 138 IPR013083 -
Mal2g3357 266 ProSiteProfiles Zinc finger RING-type profile. 60 105 IPR001841 -
Mal2g3357 266 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 25 256 - -
Mal2g3357 266 Gene3D - 187 265 - -
Mal2g3357 266 ProSiteProfiles TRIAD supradomain profile. 56 266 IPR044066 -
Mal2g3357 266 MobiDBLite consensus disorder prediction 27 55 - -
Mal2g3357 266 MobiDBLite consensus disorder prediction 28 43 - -
Mal2g3357 266 SUPERFAMILY RING/U-box 56 137 - -
Mal2g3357 266 SMART ibrneu5 203 262 IPR002867 -
Mal2g3357 266 SMART ibrneu5 128 190 IPR002867 -
Mal2g3357 266 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 25 256 IPR031127 GO:0004842|GO:0016567
Mal2g3357 266 SUPERFAMILY RING/U-box 207 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3357 Mal-Chr2 50460145 50461063 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3357 30 250 C3H Transcription Factor Family AT2G19610 26.068 3.44e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3357 K11975 - mtr:MTR_3g462570 296.204