Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mal2g3357 | ATGATGAAAATCGAATACACTCCTCCCATGTCTCCTTCTCATACTTTTCTTGCAGCAAATGGAAATCAGATTTCAATGAAGAGAAAATCTCTTTCAGAAGACCGCGATATTGAAAAGAAAAAGAAGACAAAGAAAACAATCACCCCTCGTTCTCAAGGTCAATCCTCAAAAAGCTTATGCGGTATATGTCTTGATTCTGTAATAGACTTTAAAATTTTCACAAACACTTCATGCAATCACCCCTTTTGTATTAAATGCATATCCAAGTATGTGAAAGTTCAAAGAAAAGAAAAAGTGGTGAAAGTGAATTGTCCGGATCCAGAATGCTCTGTTGAACTGAAACCAGAACATTTGCAATCCATTTTACCTAAAAAAGTCATTGTTGATTGGGAATCTGCAATTTATGAGTCTTCTATTGTTTCGAGGCAAAAAATATATTGCCCTTATAAGAATTGTTCTCTTCGGTTGGTGAATGATGGGCTAGAGGGTGTTACAAGTTGTGAATGTCCTTCTTGTCATAGGCTATTCTGTGAACAATGTGAAGTTCCATGGCATGCAGATATGAAATGCCGTCAATTTCAGAAATCGAAAAAGGTTCTAGGTGAAAAACAACTTGATAAGAAATTAGTGCAGTTGGCTAGAAGTGAAATGTGGCAGAAATGTCCGAAATGTTCTATGCATGTTGAGAAAATAGAGGGATGTGATCGCATTATATGCAGTTGTGGATGTTCTTTCTGCTACAATTGTGGTAAGAAATTCAAGAAAGGAAACTTTGATCATACATGCAAGATATCACGGTAA | 801 | 0.3608 | MMKIEYTPPMSPSHTFLAANGNQISMKRKSLSEDRDIEKKKKTKKTITPRSQGQSSKSLCGICLDSVIDFKIFTNTSCNHPFCIKCISKYVKVQRKEKVVKVNCPDPECSVELKPEHLQSILPKKVIVDWESAIYESSIVSRQKIYCPYKNCSLRLVNDGLEGVTSCECPSCHRLFCEQCEVPWHADMKCRQFQKSKKVLGEKQLDKKLVQLARSEMWQKCPKCSMHVEKIEGCDRIICSCGCSFCYNCGKKFKKGNFDHTCKISR* | 267 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mal2g3357 | 266 | ProSitePatterns | Zinc finger RING-type signature. | 78 | 87 | IPR017907 | - | |
Mal2g3357 | 266 | SUPERFAMILY | RING/U-box | 141 | 196 | - | - | |
Mal2g3357 | 266 | Pfam | IBR domain, a half RING-finger domain | 139 | 190 | IPR002867 | - | |
Mal2g3357 | 266 | Pfam | Zinc finger, C3HC4 type (RING finger) | 60 | 105 | IPR018957 | GO:0046872 | |
Mal2g3357 | 266 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 138 | IPR013083 | - | |
Mal2g3357 | 266 | ProSiteProfiles | Zinc finger RING-type profile. | 60 | 105 | IPR001841 | - | |
Mal2g3357 | 266 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 25 | 256 | - | - | |
Mal2g3357 | 266 | Gene3D | - | 187 | 265 | - | - | |
Mal2g3357 | 266 | ProSiteProfiles | TRIAD supradomain profile. | 56 | 266 | IPR044066 | - | |
Mal2g3357 | 266 | MobiDBLite | consensus disorder prediction | 27 | 55 | - | - | |
Mal2g3357 | 266 | MobiDBLite | consensus disorder prediction | 28 | 43 | - | - | |
Mal2g3357 | 266 | SUPERFAMILY | RING/U-box | 56 | 137 | - | - | |
Mal2g3357 | 266 | SMART | ibrneu5 | 203 | 262 | IPR002867 | - | |
Mal2g3357 | 266 | SMART | ibrneu5 | 128 | 190 | IPR002867 | - | |
Mal2g3357 | 266 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 25 | 256 | IPR031127 | GO:0004842|GO:0016567 | |
Mal2g3357 | 266 | SUPERFAMILY | RING/U-box | 207 | 264 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mal2g3357 | Mal-Chr2 | 50460145 | 50461063 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mal2g3357 | 30 | 250 | C3H Transcription Factor Family | AT2G19610 | 26.068 | 3.44e-19 | 84.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mal2g3357 | K11975 | - | mtr:MTR_3g462570 | 296.204 |