Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3356 ATGACTCAAAACTATAGTCCTCCCATGACTCGGTCTCGTTCTTCTCTTTCATCAAATGAAACTCAAAATACAATGATGAGAAAATCTCTTTTAGAAGATCATGATGAAAAGAAAAAGAAGCAAGCAACCACTAGAACCAACAAACAGATCAAACCAAAGACAATTATCTCTCAAGGTCAATCCTCAAAAAGCTTCAGCTGCGGTATATGCTTTGATTCTGTAACAGTCTCTAAAATGTTCAAAGCAAGTTCATGCAATCATCCCTTTTGTAATAGTTGCATATCCAAGTACGTCGATGTTCAAAGGAAGAAAAATGCGGTGAAAGTGAATTGTCCGAAGCCAGAATGTTCCGTTGAACTGAAACCAGAACATTTTCAATCCATTTTATCTAAGCAAGTCATTGTTGAATGGGAATCAACAATTTATGAATCTTCTATTGCTATGATGCAAAAAATTTATTGTCCTTATAAGAATTGTTCTCTTTTGTTGGTGAATGACGGGGGAGAGGCTGTTACAAGTTGTGAATGTCCGTCTTGTCATAGGCTATTCTGTGCACAATGTAAAGTTCCGTGGCACGCAGATATGAATTGTCACGAATTTCAGACATCAAAAAGGGGTCGAGATGAGAAACATTTGGATAAGAAATTTTTGGAGTTGGCTAAAAGAAAAAAGTGGAAGAGATGCCCCAAATGCTCTATGCATGTCCAGAGAAATGGTGGATGTGAACACATGCGCTGCAGGTTGTTTATTCTTCTACCTTCTTTGGCTCATCCTTAA 777 0.3758 MTQNYSPPMTRSRSSLSSNETQNTMMRKSLLEDHDEKKKKQATTRTNKQIKPKTIISQGQSSKSFSCGICFDSVTVSKMFKASSCNHPFCNSCISKYVDVQRKKNAVKVNCPKPECSVELKPEHFQSILSKQVIVEWESTIYESSIAMMQKIYCPYKNCSLLLVNDGGEAVTSCECPSCHRLFCAQCKVPWHADMNCHEFQTSKRGRDEKHLDKKFLELAKRKKWKRCPKCSMHVQRNGGCEHMRCRLFILLPSLAHP* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3356 258 SUPERFAMILY RING/U-box 62 144 - -
Mal2g3356 258 Pfam IBR domain, a half RING-finger domain 148 197 IPR002867 -
Mal2g3356 258 MobiDBLite consensus disorder prediction 1 47 - -
Mal2g3356 258 Gene3D - 195 248 - -
Mal2g3356 258 Pfam Zinc finger, C3HC4 type (RING finger) 67 113 IPR018957 GO:0046872
Mal2g3356 258 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 247 - -
Mal2g3356 258 MobiDBLite consensus disorder prediction 27 43 - -
Mal2g3356 258 ProSitePatterns Zinc finger RING-type signature. 85 94 IPR017907 -
Mal2g3356 258 ProSiteProfiles Zinc finger RING-type profile. 67 112 IPR001841 -
Mal2g3356 258 SMART ibrneu5 135 197 IPR002867 -
Mal2g3356 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 147 IPR013083 -
Mal2g3356 258 MobiDBLite consensus disorder prediction 1 26 - -
Mal2g3356 258 SUPERFAMILY RING/U-box 213 246 - -
Mal2g3356 258 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 247 IPR031127 GO:0004842|GO:0016567
Mal2g3356 258 SUPERFAMILY RING/U-box 147 202 - -
Mal2g3356 258 ProSiteProfiles TRIAD supradomain profile. 63 258 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3356 Mal-Chr2 50433687 50434463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3356 66 247 C3H Transcription Factor Family AT2G19610 29.381 5.34e-22 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3356 K11975 - mtr:MTR_3g462570 314.694