Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3355 ATGGAAACATCTCTTTCAGAAGACCACGATGATCAAAAGAAGGAACATCAATCTCTTTTAGCAAAAGGATCGCAAAACACAATGAAGAGAAAATCTCTTTCAGAAGACCCTAATGGTGAAAACAAGAAAAAGACAAAGAAAGCAACCAGTACTCAATCCTCAAAAAGATTATGCGGTATATGTCTTGTTTCTGTCAATGTCTCTAAAATTTTCAATAACGGTTCATGCAATCATCCCTTTTGTACTACATGCATATGCAAGTATGTGAAGATTCAAAGAAAAGAAAGAGTAGTGATACTGAATTGTCCTGATCCAGACTGTTCTGTTGAACTGAAACCAGAACACTTGCAATCAATGTTACCTAAAAAAGTCATCGTCGATTGGGAATCTGCTATTTGTGAGTCTTCTATTGATTGGAAGCAAAAAATTTACTGTCCTTATAAGAATTGTTCTCTTTTATTGGTGAATGACGGGGAAGACGGTGTTACAAGCTGTGAATGTTGTGAATGCCCTTCTTGTCGTAGGTTATTTTGTGCACAATGTAAAGTTCCATGGCACGTAGATATGAATTGTGAGGAATTTCAGAAAATAGGTGAAGGTGAATACCAGTTGGATAGGAAACTTTTGGCGATGGCGAAAAGAAGAAAGTGGAAGAGATGTCCCAAATGCTCTATGCATGTCCAGAGAAATGGTGGATGTGTGGATGTAACTTCTGCTACAGGTGTGGTACGGCCCAGATGTATGGACATAGGTGCAATAAACCTTGATTATAACATCCACGGTAACTAA 789 0.379 METSLSEDHDDQKKEHQSLLAKGSQNTMKRKSLSEDPNGENKKKTKKATSTQSSKRLCGICLVSVNVSKIFNNGSCNHPFCTTCICKYVKIQRKERVVILNCPDPDCSVELKPEHLQSMLPKKVIVDWESAICESSIDWKQKIYCPYKNCSLLLVNDGEDGVTSCECCECPSCRRLFCAQCKVPWHVDMNCEEFQKIGEGEYQLDRKLLAMAKRRKWKRCPKCSMHVQRNGGCVDVTSATGVVRPRCMDIGAINLDYNIHGN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3355 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 138 IPR013083 -
Mal2g3355 262 MobiDBLite consensus disorder prediction 33 47 - -
Mal2g3355 262 ProSitePatterns Zinc finger RING-type signature. 76 85 IPR017907 -
Mal2g3355 262 MobiDBLite consensus disorder prediction 1 48 - -
Mal2g3355 262 MobiDBLite consensus disorder prediction 1 18 - -
Mal2g3355 262 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 16 236 IPR031127 GO:0004842|GO:0016567
Mal2g3355 262 SMART ibrneu5 126 191 IPR002867 -
Mal2g3355 262 SUPERFAMILY RING/U-box 202 236 - -
Mal2g3355 262 Gene3D - 189 247 - -
Mal2g3355 262 SUPERFAMILY RING/U-box 54 139 - -
Mal2g3355 262 Pfam IBR domain, a half RING-finger domain 130 191 IPR002867 -
Mal2g3355 262 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 16 236 - -
Mal2g3355 262 ProSiteProfiles TRIAD supradomain profile. 54 262 IPR044066 -
Mal2g3355 262 ProSiteProfiles Zinc finger RING-type profile. 58 103 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3355 Mal-Chr2 50426583 50427514 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3355 15 237 C3H Transcription Factor Family AT2G19610 29.114 1.75e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3355 K11975 - mtr:MTR_3g462570 276.944