Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3323 ATGAAGCTCTCACTCTTTGGAAAAAGAGATACTCATGCAGCAAAGAAAACATGTGGTATATGCTCTGATCCAAAAACAGATTCTGATATATTCAACATAAGGTCCACCATCCTCAAAAGAAGAAAGTGCAAACACCTCTTTTGTGTTGACTGCATATGCAAGTATGTAGAAGTTAAAATTAATGATAATGCGTACAAGGTTTTGTGTCCAAGTCCAAATTGTTTTGTGAAATTTAAGCCAAAACATTTGAAACACATTTTGCCTAAACAACTTATTGCTAATTGGGAGTTTTTAATTTCGGAGTTTTCTAATCCCTCGGAGCCAAAGACTTACTGCCCTTATGCGAATTGTTCTGTTTTGTTGGGCAAAGAAAATGACATTGGAAGAGAATTTGACAGCAGTTCTACGTGCCCTTCGTGTCACAGACAATTTTGTGCAAAGTGCAAAGTTCCATGGCATGCAGGAATGAATTGTCAGAAATTCCTACAATTGAAAAGGAATGACAAAAATGATTTGGATAACAAATTTTTGGAGTTAGCTAAAATACAACGGTGGCAAAGATGTCCAAATTGCTTTATGTATGTCAAGAGAAGTGAAGGATGTAGTTTCATGAAATGCAGCTGTGGATGCAAATTCTGCTACGAATGTGGGAAGAAGCGGTCGTATATATATCGACATATATGCAATCACATTGCATTGCATTTCTACTATCTCTCATTCAAAATATCTTGTCCATGTTCGCCTTGTTTCAACAGTATACCAAAATCATTAGAAGCCAATAATATGTCATCGACATACAACACAAGGAAGATAGATTTTCTCCCACTAACCTTAAGGTATATACACTTATCAACTTTATTCTCCACAAAACCTAAATATGTGATCACTTCATCAAATTTCAGCATTGACTTTTCATTTTACAAACCAATTTGTCATTACTACCAACGTGAAAAGCCTCAGGCTTAG 966 0.3561 MKLSLFGKRDTHAAKKTCGICSDPKTDSDIFNIRSTILKRRKCKHLFCVDCICKYVEVKINDNAYKVLCPSPNCFVKFKPKHLKHILPKQLIANWEFLISEFSNPSEPKTYCPYANCSVLLGKENDIGREFDSSSTCPSCHRQFCAKCKVPWHAGMNCQKFLQLKRNDKNDLDNKFLELAKIQRWQRCPNCFMYVKRSEGCSFMKCSCGCKFCYECGKKRSYIYRHICNHIALHFYYLSFKISCPCSPCFNSIPKSLEANNMSSTYNTRKIDFLPLTLRYIHLSTLFSTKPKYVITSSNFSIDFSFYKPICHYYQREKPQA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3323 321 ProSiteProfiles TRIAD supradomain profile. 14 237 IPR044066 -
Mal2g3323 321 SMART ibrneu5 93 158 IPR002867 -
Mal2g3323 321 SUPERFAMILY RING/U-box 16 102 - -
Mal2g3323 321 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 12 228 - -
Mal2g3323 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
Mal2g3323 321 Pfam IBR domain, a half RING-finger domain 105 158 IPR002867 -
Mal2g3323 321 ProSitePatterns Zinc finger RING-type signature. 43 52 IPR017907 -
Mal2g3323 321 Gene3D - 156 237 - -
Mal2g3323 321 SUPERFAMILY RING/U-box 109 162 - -
Mal2g3323 321 SUPERFAMILY RING/U-box 175 223 - -
Mal2g3323 321 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 12 228 IPR031127 GO:0004842|GO:0016567
Mal2g3323 321 ProSiteProfiles Zinc finger RING-type profile. 18 70 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3323 Mal-Chr2 49896429 49902489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3323 16 217 C3H Transcription Factor Family AT2G19610 27.619 6.85e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3323 K11975 - mtr:MTR_0777s0010 256.914