Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3322 ATGGCTAGAGGAAATTCTAACCTCCCCATCCATTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGGCTTCAAATACCAAATAAGTTTACAAGGAGACATGGAGTTGGTCTATCAAATCCAGTGTTGATCAAACCTCCTGATGGCACTAAATGGAAAGTTTATTGGAAAAAAATCAATGGTGAGATTTGGTTTGAAAAGGGTTGGAAAAAATTTACTGAAAATTACTCTCTTGGACATGGCTGTTTGGTGGTGTTTGAATATAAAGGAGCTTCAAAGTTCCATGTACATATACTTGGCCACAATGCAGTTGAAATAGACTATGATTCTTCACGTGACACTGATGATGAAAATGATAATGTTGGTCATAGTGATGATGAATCAGTTGGAATTTTAGATGAGTTGCTTAATAGGAAGAAGGCTAGACAAAGGTCACCATTAGTTTCTCCTAGACCACATAAGAAAGTTAGAGGTGATCTTAAGAAGACTGCTTCATCATTGAATTGGCCAAAGGATGCTAGAGCTCAGGAAGTAGCTGAAAATTTCATCTCAAGCTGTCCTTTTTTCACAATTCTCATAAAGCCTAACCATCTGTTAGCAAATCAGCAGAATGTACCAAATTTTAAAGGGGTTATTGAGAACAAGAAGAAGAATGTAGTGCTTCAGATTGGAAAAAGATCATGGAATGTGAAATTGCTCTGTTGGAACGAGCACACTAAGGAACGCCGCCTATCGGCGGGTTGGTGCTTGTTTGCAAATGAAAGTGGACTGCAACCAGGAGATGTTTGTGTCTTTGAACTGATAAATAAGGAAGATTTAGTTTTTAAAGTTCATGTTTTCTAA 843 0.3737 MARGNSNLPIHFFKIILQTNLQRLQIPNKFTRRHGVGLSNPVLIKPPDGTKWKVYWKKINGEIWFEKGWKKFTENYSLGHGCLVVFEYKGASKFHVHILGHNAVEIDYDSSRDTDDENDNVGHSDDESVGILDELLNRKKARQRSPLVSPRPHKKVRGDLKKTASSLNWPKDARAQEVAENFISSCPFFTILIKPNHLLANQQNVPNFKGVIENKKKNVVLQIGKRSWNVKLLCWNEHTKERRLSAGWCLFANESGLQPGDVCVFELINKEDLVFKVHVF* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3322 280 Gene3D - 170 280 IPR015300 -
Mal2g3322 280 CDD B3_DNA 11 99 IPR003340 GO:0003677
Mal2g3322 280 SMART B3_2 12 102 IPR003340 GO:0003677
Mal2g3322 280 SMART B3_2 188 278 IPR003340 GO:0003677
Mal2g3322 280 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 5 280 IPR039218 -
Mal2g3322 280 Gene3D - 6 103 IPR015300 -
Mal2g3322 280 MobiDBLite consensus disorder prediction 144 158 - -
Mal2g3322 280 MobiDBLite consensus disorder prediction 141 163 - -
Mal2g3322 280 Pfam B3 DNA binding domain 19 99 IPR003340 GO:0003677
Mal2g3322 280 Pfam B3 DNA binding domain 196 280 IPR003340 GO:0003677
Mal2g3322 280 SUPERFAMILY DNA-binding pseudobarrel domain 185 280 IPR015300 -
Mal2g3322 280 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 5 280 - -
Mal2g3322 280 CDD B3_DNA 188 280 IPR003340 GO:0003677
Mal2g3322 280 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Mal2g3322 280 SUPERFAMILY DNA-binding pseudobarrel domain 10 102 IPR015300 -
Mal2g3322 280 ProSiteProfiles B3 DNA-binding domain profile. 226 280 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3322 Mal-Chr2 49889474 49892042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3322 8 280 B3 DNA Binding Superfamily AT3G18990 27.168 8.68e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal2g3322 B3 1.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3322 - - mtr:MTR_3g061330 381.719