Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3282 ATGGAGAAGCGGAAACAACATGTAGGTGGACCTCAAACTGCGAATAATTATCATCCGATTGATCAATCCCTACCTGAGTATTTTACAGATGAATTTATGATGAATGAATTCAAAGTGAAGCTTTGTTCAAGGGCTGATCCTCATAATTGGACTGAATGTCCCTTTACTCATCCTGGGGAAAAAGCAAGGCGCCGTGATCCGAGTAAATATCGGTACAAATGTGTCGCTTGTCATGAGTTTCAGGAGGGATTATCATGCAGTAAAGGGGATACTTGTCAATATACACATGGTCTTTTTGAGTACTTGCTTCATCCTGATAAATACAGAAAAAAGCTTTGCTATGATGGTGCTAAATGCATAAGAAAATTTTGCTTCTTTGCTCACAAACCAGAGGAACTTCGCCCGTCGAAAGCTTCTACCAGTTCTGCTTTGCCTTCACCTACATCATATTTAAATTCATCAAGTGCTTCTGCAATGGATTCTTTCACATTGAGCTTGCCGTCTGCTTTGATACAATCTTTGTCGAAGCTGAGTTGGACTCCGCCTGCAGGAGCAATCATTTTCGGGTCACACATACCTTCTGTCCCTACCAATTCAGGAATGCAGGTGCAGGTGCATCAGAATGTGAACCAACAACTTCGGGGATATCCTTCTGACCTTACCAATTCAAATGTGGTTGGATCACCACAATTTAGGGTTGATCCGAAGCAGAGCCAGAGCTTTATCGAGAGCAGCAGCGCGGCTAGCTTTAATTCCAAGCTTCCTTCTGCTACCTCAGTTGCGTTGGAGCCTTCTACCGCCTTCTCCGATTGGCACTGCCCTGGTAGAAAAGCAGATTGGTCTATCCCTGGTGATAAACTCAATGAAATGACAACATCTTATACTTTTGGCTTCCAAAACGAAACTAGCAACGCTTCAACAATGGCTGCTGCATCAAATGTTGATGAGCATGATGCATTATTAAGCCATGGATTTTGGGTTAATTCACTTGTGAAGGATGATCCAACATTGGAATCTGATCAACATTGCATTGAAGTTGAAGATCAACCGCAATGCCCTAATCCGGACGATGTTCCGTCTTAG 1083 0.4294 MEKRKQHVGGPQTANNYHPIDQSLPEYFTDEFMMNEFKVKLCSRADPHNWTECPFTHPGEKARRRDPSKYRYKCVACHEFQEGLSCSKGDTCQYTHGLFEYLLHPDKYRKKLCYDGAKCIRKFCFFAHKPEELRPSKASTSSALPSPTSYLNSSSASAMDSFTLSLPSALIQSLSKLSWTPPAGAIIFGSHIPSVPTNSGMQVQVHQNVNQQLRGYPSDLTNSNVVGSPQFRVDPKQSQSFIESSSAASFNSKLPSATSVALEPSTAFSDWHCPGRKADWSIPGDKLNEMTTSYTFGFQNETSNASTMAAASNVDEHDALLSHGFWVNSLVKDDPTLESDQHCIEVEDQPQCPNPDDVPS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3282 360 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 18 184 - -
Mal2g3282 360 Gene3D - 67 143 - -
Mal2g3282 360 MobiDBLite consensus disorder prediction 1 21 - -
Mal2g3282 360 PANTHER UNKEMPT FAMILY MEMBER 18 184 IPR045234 -
Mal2g3282 360 ProSiteProfiles Zinc finger C3H1-type profile. 71 99 IPR000571 GO:0046872
Mal2g3282 360 SMART c3hfinal6 71 98 IPR000571 GO:0046872
Mal2g3282 360 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 197 339 - -
Mal2g3282 360 PANTHER UNKEMPT FAMILY MEMBER 197 339 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3282 Mal-Chr2 48961208 48962290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3282 18 182 C2H2 Transcription Factor Family AT5G12850 54.070 5.93e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal2g3282 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3282 - - mtr:MTR_3g464290 336.65