Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3188 ATGGCGAGAGGGCGTGTGAAACTTGAATACATTATCAATAACTCAAAACGGAGGGTGACATTCAAACAAAGAAAAGCGGGTTTAATTAAAAAGATGAATGAACTGAGCACCCTTTGTGGGATAGAGGCATGTTTGATAATTTATGGTGAAAACTATCGTCGAGCAGAGGTTTGGCCATCCGCGTCAGGAGTAAGAAGTGTGTTAGCAAGGTTCATGAGTTTTCCCGAACTCGAACGAACCAAAAATATGATGGATTTGGATAGTTTCTTGACACAAAGCGTTGAGAAAGTCCAAAAGTTGTTGAAGAAACAATGGGAGGATAACAAGAAGAAAGAAAATGCTGATTTTATAAGTCAATTTATTAATACTGGTAATTGTAACTTTGGCAATATGAGCTTGAGTGACCTTAATGGTCTGACGAATTTTATTGATGAAAATATGAAGGAAGTTGAGGAGAGGTTGGATTCAATGAAAGTCCAAGCTCAAGAGGAGGTTGGAAATGAACTTGAATTTGTGAATGGAGGAGATATGCTCCCTAATATGGGTATGGCTCAAGTGCCAGTGAATGTAGCTAATATGCAGGATAATGTGGGTGATGGTGTTGATGCCCAAGATTTGGTGGCCAACATGAACTATGGTATGGAAAATTGA 651 0.3886 MARGRVKLEYIINNSKRRVTFKQRKAGLIKKMNELSTLCGIEACLIIYGENYRRAEVWPSASGVRSVLARFMSFPELERTKNMMDLDSFLTQSVEKVQKLLKKQWEDNKKKENADFISQFINTGNCNFGNMSLSDLNGLTNFIDENMKEVEERLDSMKVQAQEEVGNELEFVNGGDMLPNMGMAQVPVNVANMQDNVGDGVDAQDLVANMNYGMEN* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3188 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mal2g3188 216 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Mal2g3188 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal2g3188 216 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Mal2g3188 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal2g3188 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal2g3188 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g3188 216 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal2g3188 216 Coils Coil 147 167 - -
Mal2g3188 216 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 174 - -
Mal2g3188 216 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mal2g3188 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3188 Mal-Chr2 46038258 46039494 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3188 1 190 Type I MADS-box Gene Family AT5G48670 37.113 1.45e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g3188 SRF-TF 2.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3188 - - mtr:MTR_3g031100 221.861