Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3158 ATGGCTTCTTCCTTGGATATGTCACTTGATGATAGAATTAAGAGCAGGAGTAACAGAGGCAGGGGCAGAGGACGCGGCAAAGCCCTTTCTGGCCGTGGAAGTGGGACTCTAGGAGGTGGAAGAAGGACCGGTGCTGTTAATGGTAGAAGGACTGGTAATGGTGGAAGAACTGGTGCTGTTCGTAGAGGCCCACTTATGGTCAACAATCGCCCGTCATCATATGCTATTGCCAAGTCTATTCGCAGACCCAAGACTCTTGCATGGCAGAGTGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATTCAAGGAGTAGAAGCTGACACAAAGTTGTATGTTTCCAACTTGGACAGAGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTCGGGGAGTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACACCCAACTGGTTCAGCTGAAGTTGTCTACAATAGAAGAAGTGATGCATTTGCTGCTCTTAAGCGATATAACAATGTACTCTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGAACAAATTCAGAATTGCCTGTAACTGCACGGGTGAATGTCTCTGCAATGAATGGACAGAGGAAGAGGACAGTTGTAATGACGCCCAGAGGTGGTCGAGGTGGAGGTCCCACCATGCTAAACCGCGGTGCTGGTTGGGGACGTCGTGGCGGCTCAAGGGGTGGGAGTGGCAGTGTGCGTGGACGTGGCCGAGGCCGTCCTGGCAGGGGTGGAGGTCGAGGTCGTGGAAGAAAGGATGGAGTTGAGAAGTCAGCTGAGCAACTTGACAAGGAACTGGAGACCTATCATGCAGAGGCTATGCAAACATGA 861 0.4971 MASSLDMSLDDRIKSRSNRGRGRGRGKALSGRGSGTLGGGRRTGAVNGRRTGNGGRTGAVRRGPLMVNNRPSSYAIAKSIRRPKTLAWQSDLFEDSLRAAGIQGVEADTKLYVSNLDRGVTNEDIRELFSELGELKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPVTARVNVSAMNGQRKRTVVMTPRGGRGGGPTMLNRGAGWGRRGGSRGGSGSVRGRGRGRPGRGGGRGRGRKDGVEKSAEQLDKELETYHAEAMQT* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3158 286 Coils Coil 262 282 - -
Mal2g3158 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 179 IPR000504 GO:0003723
Mal2g3158 286 SUPERFAMILY RNA-binding domain, RBD 23 183 IPR035979 GO:0003676
Mal2g3158 286 CDD RRM_THOC4 109 183 - -
Mal2g3158 286 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 286 - -
Mal2g3158 286 Pfam C-terminal duplication domain of Friend of PRMT1 229 281 IPR025715 -
Mal2g3158 286 MobiDBLite consensus disorder prediction 256 280 - -
Mal2g3158 286 SMART FoP_duplication_2 214 286 IPR025715 -
Mal2g3158 286 Gene3D - 102 185 IPR012677 -
Mal2g3158 286 MobiDBLite consensus disorder prediction 211 286 - -
Mal2g3158 286 PANTHER THO COMPLEX SUBUNIT 4C 1 286 - -
Mal2g3158 286 SMART rrm1_1 110 182 IPR000504 GO:0003723
Mal2g3158 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 186 IPR000504 GO:0003723
Mal2g3158 286 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3158 Mal-Chr2 45035445 45039082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3158 111 183 Eukaryotic Initiation Factors Gene Family AT2G23350 38.356 1.25e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3158 K12881 - gmx:100801491 327.791