Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3136 ATGACTAGAAAAAAGGTGAAACTTGCATTCATAATCAACGACTCCGCGAGGAAGGCAACTTTCAAGAAAAGAAAGAAAGGTCTAATGAAAAAGGTTAGTGAACTCAGCACCCTCTGTGGAATTGATGCTTGTGCTATAATCTATAGTCCTTATGATCCTCAACCAGAGGTTTGGCCATCTCAGTTAGGAGTCCAAAGGGTACTTTCAAAGTTCCGAAAAATGCCTGAATTGGAACAAAGCAAAAAGATGGTGAACCAAGAGAGTTTTTTGAGGCAGAGGATTCAAAAGGCGAAAGATCAATTGACAAAACAAAGAAAGGATAATAGAGAGAAAGAAATGACCCAGTTAATGTTTCAGTACCTTAGTGCTGATCAAGTTATGCACAATATAAGCATGGTTGATTTGAATGATATGGCATGGTTGATTGATCAGTATTTGAAAGATATCAATAGAAGGGTTGAAATGTTGACCAGGAATGGTCAAGGTCAACCTCAAATGGTAGCACCAACAATGGTGGCTAATGGAGTACCTAAGATTGAAGATCATGGACAAGGGAGTCATGGTCAACAGGTTTTGGACATGAACATGGATGTTATGCAAAAGCAACATTTTTTCATGAATTTGATGAATAATGGTGGTGGGGATCAGGCACCTCCTATGGGAAATGTCAATCCCCAAAACGGTTTTTGGCCAAATCCTTTTTTCCGTTGA 711 0.391 MTRKKVKLAFIINDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSQLGVQRVLSKFRKMPELEQSKKMVNQESFLRQRIQKAKDQLTKQRKDNREKEMTQLMFQYLSADQVMHNISMVDLNDMAWLIDQYLKDINRRVEMLTRNGQGQPQMVAPTMVANGVPKIEDHGQGSHGQQVLDMNMDVMQKQHFFMNLMNNGGGDQAPPMGNVNPQNGFWPNPFFR* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3136 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mal2g3136 236 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Mal2g3136 236 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 201 - -
Mal2g3136 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mal2g3136 236 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mal2g3136 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g3136 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal2g3136 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 - -
Mal2g3136 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal2g3136 236 Coils Coil 87 114 - -
Mal2g3136 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3136 Mal-Chr2 44656171 44656881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3136 1 186 Type I MADS-box Gene Family AT5G48670 59.596 4.63e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g3136 SRF-TF 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3136 - - gmx:100813231 385.571