Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3114 ATGACAATGGAAGAAGTTTCTTTAGCAGGAGCAGTCCCTTTTGATAGAGCTCTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTCAAGTGTGGTAGTCGAGGAAAGCCGAAGCTCTGCCCTTTTAGACTTTCTCCGGATGAGAGAAATTTGATATGGTGCTCAGGGCAGCAAGAAAAGCATTTGCGATTGAGCGGAGTAACCAAAATTGTTCAAGGAGAGGGAAATATAAGGTCTCAGAGACAAAACGAAACCGAAAAGGAGTGCCATTCATTTTCACTGATCTATGCTAATGGTGAACACTCTCTTGATCTGATATGCAAAGACAAAGCACAAGCTGCTACATGGTTTGTTGGATTGAAAGCTGTGATTTCTAGGTGCCAGCAACCAAAAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTCAGTAGTCCCTCTGGAATTTTACGCCGAAAGAAAAATCTTGGTCTTCTAGATGACACCTCTCAATTTACTCAGGTACATAGCGTATGCGCAAGTCCTACTTTGTCACTTTCAGAACGGTGTTTTTCTGACGGCTTGTCATATAAATCTGACTTTTATTCATCGGCATCGTCCCTCTCCAGCATTCATGGCATAACAGATAATTCAGTCCCAAGTTCTCCATATATTAATCCAGATATTCATAGCAATATCAAAACATCTCGTTTTGAAAAAGAGTACAAGAAGGATTTATTATCAAATAGATCTATAATGCCTCCTGCCTCCTCACATGTAGGAAATAACAACGTACTGAAGGATGTGATGATATGGGGTGGTAGAATTGGTTCCCTTGTAGGGATTGTGAATGAAAGGTTTGTCCAAAATAGTATTTATTCTTTAGTTCCAAAGTTACTCGAATCCACCGCCATGTTAGATGTACAAAATGTAGCTTTAGGAGGAAACCATGCTGCAATAGTTACGAAACAAGGGGAAGTTTATTGCTGGGGTCAAGGGAAGTGTGGAAGATTAGGGCAAAGAATTGATATGGACATTAGCTCCCCGAAAATTGTTGATTCTCTTAGTGATATTCGTGTAAAAAACGTTGCTTGTGGCGAGTATCATACATGTGCTTTGACGGATTCCGGCGAAGTATATGCGTGGGGGAACGACGTTTCTTGTTCGGATTTGGTTAATGAAGGGAGAATTAGAAGTCAGTGGTTAACACATAAACTTTCTTTACCAGTAGAAGGTATTAGTATTTCCAGCGTTGCTTGTGGCGAATGGCATACTGCAATTGTCTCTAGTTGCGGTCGGTTATTTACGTATGGAGATGGTACATTTGGAGTACTTGGACATGGGAATTATCATAGCTTTTCTAGTCCAAAAGAAGTTGAGTCTCTTAAGGGTCTGTGTGTGAGGTCTGTTGCTTGTGGAACATGGCATACGGCAGCAATTATTGAAGTCACCGCCGAACGTTTTAAGTACAATACTTTGATTGGTAAGCTGTTTACATGGGGTGATGCAGATGAAGGGAGGCTTGGTCATGCTGATAGTGGAAACAAGCTTGTACCGACATGTGTTTCACAGCTTGTCGACTACGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTTTAGCACTTACTAACATGGGAAAAGTTTTTGCAATGGGAAGTGCAAAATATGGACAATTGGGAAATCCACATGTTAAGGATAGAGCAGTTATGGTTGAAGGAATGCTTAAACAAGAGTATGTTAAAATGATATCTTGTGGTTCATATCATGTTGCGGTTTTGACATCTTCAGGGAGTGTCTACACGTGGGGCAAAGGCGAAAATGGACAACTAGGGCTAGGCGATACCGAAAACCGATACACACCTTGTTCTGTTGAGGCTTTAAGAGATAGGCAGGTAGATACAATAACATGTGGTCCAAGTTTCACAGTTGCAATATGTTTGCACAAACCTATTTCAATTAGTGACCAATCAAGTTGTAGTGGTTGTAGGTTACCGTTTGGCTTCACAAGGAAGAAACATAACTGTTATAATTGCGGTCTTTTGTTTTGCCGCAGTTGTAGTAGCAAAAAAGTTATGAATGCGTCTCTAGCCCCGGTTAAGAGCAAGGCCTTTCGCGTTTGTGATTCGTGTTTCAATAGAAAGCAAGGAAGTAGTGAACATTCAGTTATTGACTCATCAAAGTCTAGAAGTTATAACAATCAGCAGATACAACGGCATCATCAGAACATGATTGGTGATGTCACTGAAGATAGAGGAGAAACAAATGTGACAAATAGTCCTCTGTTGTCACTTAGTCAAACGTGTTACCGGAAAAACATGCCTAGTGGAAGGAAGGTTTGGAAAAACCAACATGAAAGCCAGCAGGATTTAGAAGATAGTTCTTCTAAGTTAGGTAGTGTGATACAATGTGGACAAGGACAAGTCCCATATTCAACACAATTAGGTAGTTTGATACAATGTGGACAAGGACAAGTTCCATATTCAGCACAATTTAGAATCAATTGTACAGAAAATTCAGTTGTGCATCAGACAGATACAACAAAATCTGATAAGTTACTCATGGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAAGAGACTTGAAAAGCAATGTGAGCTCAAAAACCATGAAATACAAGAGTGTCAACAAAAAGTTGAGGAGAGTTGGTCTGTTGCGAAAGAGGAAGCTGCTAAGTGCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCCTTAAGGCTTCACACAATCTCAGGAAAAGATAATCATGGCCTAGAACAAAAGGGTGGGTTACAAGAATTTCTTCCAAATTTGGCACCTATACATACTGATACAAATAGTCCAAGAAATGCCAACATGGACAGTGTATCAAATTCACCTATAATATTCTCTAGTGCCTTAAAATCCAAATTTGGGAGAAGTATTCTTCTTAAGGACAAATTGACGGAGAACACCAATCGCACTAAAGCAGAATCTCAACAAGAGAATGCATCGAAGGTTGTTCAATGGGTAGACCAATATGAGAATGGTGTTTACATAACATTGACAAAGTCGCCGAGTGGAGAAAAAGGCCTTAAGCGTGTGAGATTTAGCCGGAAGCGATTTTCGCAGAAAGAAGCTGAAAAGTGGTGGGAAGAGAATCAAGAAAAAGTGAGGTGA 3156 0.4015 MTMEEVSLAGAVPFDRALEQAIVSIKKGAYLLKCGSRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGEGNIRSQRQNETEKECHSFSLIYANGEHSLDLICKDKAQAATWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPSGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGLSYKSDFYSSASSLSSIHGITDNSVPSSPYINPDIHSNIKTSRFEKEYKKDLLSNRSIMPPASSHVGNNNVLKDVMIWGGRIGSLVGIVNERFVQNSIYSLVPKLLESTAMLDVQNVALGGNHAAIVTKQGEVYCWGQGKCGRLGQRIDMDISSPKIVDSLSDIRVKNVACGEYHTCALTDSGEVYAWGNDVSCSDLVNEGRIRSQWLTHKLSLPVEGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYHSFSSPKEVESLKGLCVRSVACGTWHTAAIIEVTAERFKYNTLIGKLFTWGDADEGRLGHADSGNKLVPTCVSQLVDYDFVQVSCGRMLTLALTNMGKVFAMGSAKYGQLGNPHVKDRAVMVEGMLKQEYVKMISCGSYHVAVLTSSGSVYTWGKGENGQLGLGDTENRYTPCSVEALRDRQVDTITCGPSFTVAICLHKPISISDQSSCSGCRLPFGFTRKKHNCYNCGLLFCRSCSSKKVMNASLAPVKSKAFRVCDSCFNRKQGSSEHSVIDSSKSRSYNNQQIQRHHQNMIGDVTEDRGETNVTNSPLLSLSQTCYRKNMPSGRKVWKNQHESQQDLEDSSSKLGSVIQCGQGQVPYSTQLGSLIQCGQGQVPYSAQFRINCTENSVVHQTDTTKSDKLLMEEVQRLRAEAKRLEKQCELKNHEIQECQQKVEESWSVAKEEAAKCKAAKEVIKALALRLHTISGKDNHGLEQKGGLQEFLPNLAPIHTDTNSPRNANMDSVSNSPIIFSSALKSKFGRSILLKDKLTENTNRTKAESQQENASKVVQWVDQYENGVYITLTKSPSGEKGLKRVRFSRKRFSQKEAEKWWEENQEKVR* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3114 1051 SMART fyve_4 647 716 IPR000306 GO:0046872
Mal2g3114 1051 SUPERFAMILY PH domain-like 18 127 - -
Mal2g3114 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 494 545 IPR000408 -
Mal2g3114 1051 Pfam Pleckstrin homology domain 19 125 IPR001849 -
Mal2g3114 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 546 596 IPR000408 -
Mal2g3114 1051 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 469 479 IPR000408 -
Mal2g3114 1051 MobiDBLite consensus disorder prediction 1033 1051 - -
Mal2g3114 1051 Gene3D - 258 390 IPR009091 -
Mal2g3114 1051 Gene3D - 391 483 IPR009091 -
Mal2g3114 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 324 375 IPR000408 -
Mal2g3114 1051 SUPERFAMILY FYVE/PHD zinc finger 654 719 IPR011011 -
Mal2g3114 1051 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 653 715 IPR017455 -
Mal2g3114 1051 PANTHER F12P19.9 PROTEIN 17 1050 - -
Mal2g3114 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 596 645 IPR000408 -
Mal2g3114 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 431 479 IPR000408 -
Mal2g3114 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 546 593 IPR000408 -
Mal2g3114 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 494 542 IPR000408 -
Mal2g3114 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 597 648 IPR000408 -
Mal2g3114 1051 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 725 IPR013083 -
Mal2g3114 1051 Pfam Transcription factor regulating root and shoot growth via Pin3 1001 1050 IPR013591 -
Mal2g3114 1051 Gene3D - 484 654 IPR009091 -
Mal2g3114 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 431 482 IPR000408 -
Mal2g3114 1051 CDD FYVE_like_SF 658 711 - -
Mal2g3114 1051 Pfam FYVE zinc finger 655 713 IPR000306 GO:0046872
Mal2g3114 1051 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 376 430 IPR000408 -
Mal2g3114 1051 ProSiteProfiles BRX domain profile. 1000 1051 IPR013591 -
Mal2g3114 1051 Coils Coil 850 884 - -
Mal2g3114 1051 Gene3D - 17 134 IPR011993 -
Mal2g3114 1051 MobiDBLite consensus disorder prediction 1032 1051 - -
Mal2g3114 1051 CDD PH_PLC_plant-like 16 128 - -
Mal2g3114 1051 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Mal2g3114 1051 PRINTS Chromosome condensation regulator RCC1 signature 417 433 IPR000408 -
Mal2g3114 1051 PRINTS Chromosome condensation regulator RCC1 signature 326 342 IPR000408 -
Mal2g3114 1051 PRINTS Chromosome condensation regulator RCC1 signature 307 320 IPR000408 -
Mal2g3114 1051 PRINTS Chromosome condensation regulator RCC1 signature 592 613 IPR000408 -
Mal2g3114 1051 PRINTS Chromosome condensation regulator RCC1 signature 433 447 IPR000408 -
Mal2g3114 1051 PRINTS Chromosome condensation regulator RCC1 signature 535 553 IPR000408 -
Mal2g3114 1051 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 1050 - -
Mal2g3114 1051 SUPERFAMILY RCC1/BLIP-II 266 649 IPR009091 -
Mal2g3114 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 310 335 - -
Mal2g3114 1051 Pfam Regulator of chromosome condensation (RCC1) repeat 359 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3114 Mal-Chr2 44227709 44233175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3114 995 1051 Major Intrinsic Protein MIP AT1G31880 44.828 2.14e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3114 - - gmx:100794953 1579.3