Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3099 ATGGGGAGAAAGAACAAGAAAAGAAAAAAGGAAGAAATCGCTGAAGATTGCTGTTTCATTTGCAAAGATGGTGGTGATATGAGAGTCTGTGATTTTCGCGATTGCCTTAAAACCTATCATGCTGAATGCGTGGAAAGAGATGATTCCTTTTTGACAAGTGACAATAGGTGGTGTTGTGGTTCTCATTATTGTCACCTATGCCGTAGAGCATCGAAGTTTATGTGCTTGTGCTGTCCAAAAGCTTTTTGTGGAGAATGCTTCTATGGTGCTGAATTTGCTCTTGTCAAAAGAAAGAAAGGATTTTGTAGCCACTGCTCAAAACTTTCCGTTCTAATTGAGAAAAATGCTGACGTTGATTCTGATGGGGAAAAGGTTGATATGAAAGACCCAGAAACATTCGAAAGCTATTTTTTTGATTATTATCAAGCTATCAAAAACAAAGAAGGACTCAATTCTGAGCAAATTTTTTTTGCCCGGGACATCATTAAAAATGGGAAAAACAAGTGTGATTTGGATCCATATGAATTAGGTGAGGGGGAAGATGACACTACTGAATCGGATGTTAGTGACTTCATAGGTTCTGGGTGTGATGACCTGCACGACACGGCAGGAGTTAAATCAGTGAGTAGAAAGAAGAAGTGCTTGAAAGAGCTCGAATCATTAAATCGAAAAGTAGAGAAAGACAAGAAAAAGGATTTTGTTGGATGGGGATCAAGAACGCTCATAGAGTTTCTTAAAAATATTGGTAGAGACACGACCAAAGCTGTTTCTGAACTTGATGCTGCTTCCATCATCATTGAGTACTGCCACAAAAACCAGCTTTTTGACCCCAAGAAAAAGAAGATGGTAATCTGTGATGCAAATTTAAGAGCTTTACTGAGGCGGAAATCTGTTAATAAAAACCACATACAAAAGCTTCTTGAATCTCATTTTTTAGATAATTTTGAGGAATCTGACGGTATTATCAGTAGTTCAGAAGAAAGGTGTAATGATAATGAGGCATTCAAATTTCCAAAGCAGGGAAATTTGAATTCAACTGCAAAATCGTGTCAGAACATACTTTCTGAAGAGCTACCAAGTGGATTTGCAGCTATAATTAATTCAAACATAAAACTTGTCTACTTGAAGAGGAGCTTAATTGAGGAGCTTTTGAAGCAACCAGAAACCTTTGATGACAAAGTGTTGGGAAGTTTTGTTAGAACCAGATCCGACCCAAATGACTATTCACAGAAGAATTCCCATCTGCTCGTACAAGTAATAGTAATTCCTGAAATGGTTGATACCAATCTGTCACCAGAAGATTCCTCAAGAAAAGATAAGCTTGAGCAAAATGATTTGCCAGAATTAGCCATTGGAGAGACTTGTAATTCTGTTGAACAATACTCCACACATGATGGTTTTGCTCAATGTCTAAAAACTCCGGTGGAAAATAACCAAGATGATACAGCCTTTCCTGCCTCTGTGGAACAATTGTCTGTCCTCCTTGCTTCTGAAGGCAAAGATGCTTCTCAAATAAACCTGTTTCAGTATACCTTAACAAGCCAAGATGATCGCAAGCCTGCACTCCTGAAAGAATCAAACTCTGATTGTCAGACCGTAAATCTGAGTGCTAACATGGATGTCAATCAGACAGTAAAGGAAAGGCAAAGGGTTATGGTTGCTGATCCTGTTAAGGCGACCGTCAATGACGTTATTGTGTTAAGTGACAGTGATGAAGAGGATGTGAATATTAGAGTCACTTCATCGGGAAGAAAGGGAATGGAGAGTCCTGATATTTCTATTTGGAATTGTTCGGGTATTAGTGGCAGTGAAACAAGAGGGCCTTTTCCAATGACTCTACTCAAACACTGGAGTGAATTGGATTCCACATGTTCTCCCTTAGACTTCAAGGTCTGGAAGACAGGTGAGAGTGAACGAGAGGCAATGCTTCTGAGGGATGCACTTAAGCTCTATTTTCCCTAA 1962 0.3909 MGRKNKKRKKEEIAEDCCFICKDGGDMRVCDFRDCLKTYHAECVERDDSFLTSDNRWCCGSHYCHLCRRASKFMCLCCPKAFCGECFYGAEFALVKRKKGFCSHCSKLSVLIEKNADVDSDGEKVDMKDPETFESYFFDYYQAIKNKEGLNSEQIFFARDIIKNGKNKCDLDPYELGEGEDDTTESDVSDFIGSGCDDLHDTAGVKSVSRKKKCLKELESLNRKVEKDKKKDFVGWGSRTLIEFLKNIGRDTTKAVSELDAASIIIEYCHKNQLFDPKKKKMVICDANLRALLRRKSVNKNHIQKLLESHFLDNFEESDGIISSSEERCNDNEAFKFPKQGNLNSTAKSCQNILSEELPSGFAAIINSNIKLVYLKRSLIEELLKQPETFDDKVLGSFVRTRSDPNDYSQKNSHLLVQVIVIPEMVDTNLSPEDSSRKDKLEQNDLPELAIGETCNSVEQYSTHDGFAQCLKTPVENNQDDTAFPASVEQLSVLLASEGKDASQINLFQYTLTSQDDRKPALLKESNSDCQTVNLSANMDVNQTVKERQRVMVADPVKATVNDVIVLSDSDEEDVNIRVTSSGRKGMESPDISIWNCSGISGSETRGPFPMTLLKHWSELDSTCSPLDFKVWKTGESEREAMLLRDALKLYFP* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3099 653 SMART rtf1 364 457 IPR004343 GO:0003677
Mal2g3099 653 Gene3D - 366 446 IPR036128 GO:0003677
Mal2g3099 653 Pfam SWIB/MDM2 domain 241 311 IPR003121 -
Mal2g3099 653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 110 IPR013083 -
Mal2g3099 653 PANTHER OS01G0884500 PROTEIN 1 420 IPR045894 -
Mal2g3099 653 Coils Coil 211 231 - -
Mal2g3099 653 ProSiteProfiles SWIB/MDM2 domain profile. 233 313 IPR003121 -
Mal2g3099 653 SUPERFAMILY Plus3-like 365 420 IPR036128 GO:0003677
Mal2g3099 653 Pfam Plus-3 domain 369 422 IPR004343 GO:0003677
Mal2g3099 653 SUPERFAMILY SWIB/MDM2 domain 233 316 IPR036885 -
Mal2g3099 653 CDD SWIB-MDM2_like 236 311 - -
Mal2g3099 653 PANTHER OS01G0884500 PROTEIN 421 618 IPR045894 -
Mal2g3099 653 Gene3D SWIB/MDM2 domain 223 321 IPR036885 -
Mal2g3099 653 PANTHER GYF DOMAIN PROTEIN 1 420 - -
Mal2g3099 653 CDD PHD5_NSD 18 62 - -
Mal2g3099 653 Gene3D - 594 653 IPR035445 -
Mal2g3099 653 PANTHER GYF DOMAIN PROTEIN 421 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3099 Mal-Chr2 43864398 43872503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3099 2 101 PHD Transcription Factor Family AT3G14980 27.778 5.58e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mal2g3099 Plus-3 5.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3099 - - lang:109330251 529.635